PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G39280.1 | ||||||||
Common Name | LOC102718252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26830.7 Da PI: 8.386 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.6e-18 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ OB03G39280.1 4 RGHWRPSEDEKLKELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ OB03G39280.1 56 RSPFTEEEEELLLASHRAHGNR-WAVIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.683 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-18 | 4 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.82E-14 | 7 | 48 | No hit | No description |
SMART | SM00717 | 1.4E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.144 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-14 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-5 | 71 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERMR LSSRRGGGGG 120 AAAGGVKNGS PRRPTRPDMN SSSMASLLDK YRRECGAAGL FAISSSHHNS KEDYCSSTNE 180 DTSKSVEFYD FLQVNASSSD TKCGSSIEEQ EDNNRDDDQA EGQVQLIDFM EVGATSRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-34 | 1 | 105 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-34 | 1 | 105 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G39280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111560 | 1e-167 | AK111560.1 Oryza sativa Japonica Group cDNA clone:J013060F16, full insert sequence. | |||
GenBank | CT832783 | 1e-167 | CT832783.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650510.1 | 1e-179 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q6R0C4 | 2e-77 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | J3LSA2 | 1e-178 | J3LSA2_ORYBR; Uncharacterized protein | ||||
STRING | OB03G39280.1 | 1e-178 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-66 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Entrez Gene | 102718252 |
Publications ? help Back to Top | |||
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