PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G39100.1
Common NameLOC102716026
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 785aa    MW: 90805.2 Da    PI: 6.6693
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G39100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1927.7e-2967154289
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   fY +YA++vGFsvr+sks+ s+++++i++r+fvCskeg++++++++t k++r+ra  r gC+a+++v++++ g+w+v+kl +eHnH++
  OB03G39100.1  67 FYMAYASRVGFSVRISKSRCSRNDESIIMRRFVCSKEGFHHKKQNDTGKRKRKRAILREGCHAMIEVSQKYYGRWVVIKLIKEHNHAV 154
                   9*************************************************************************************97 PP
2FAR177.42.7e-24188275290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fY +YA+++GF+vr++ s++s ++ ++++r+fvC++eg +  e+++ +k++r+r + r gC+a++++ k++++kw+v+kl l H+Hel+
  OB03G39100.1 188 FYYAYASRMGFDVRIRLSRRSPKDSTFVMRRFVCTREGATPCEENE-NKRKRNRGVPREGCQAMFEIVKKDHDKWVVSKLFLAHTHELV 275
                   9****************************************99999.999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2667154IPR004330FAR1 DNA binding domain
PfamPF031014.1E-21188275IPR004330FAR1 DNA binding domain
PfamPF105512.1E-14392476IPR018289MULE transposase domain
PfamPF044341.3E-7668706IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.324669707IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-6682709IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MENASSEDNL LRDNLVDLND DYIENQMAFD VNDELVNMNN NSSKENLENS EPFVGMEFES  60
EEAAKVFYMA YASRVGFSVR ISKSRCSRND ESIIMRRFVC SKEGFHHKKQ NDTGKRKRKR  120
AILREGCHAM IEVSQKYYGR WVVIKLIKEH NHAVAAPSIV RYIVPEEYAQ LEPFAGMEFP  180
SHEAAQTFYY AYASRMGFDV RIRLSRRSPK DSTFVMRRFV CTREGATPCE ENENKRKRNR  240
GVPREGCQAM FEIVKKDHDK WVVSKLFLAH THELVNVPNK VHYIQSNSEV VVLAKTSVLR  300
DNSIAPTLNP LPADLGKNFE NQATNDQEII ERCRNAFGLD DTQKLLGYFK RLNAENPTFS  360
YAFQVDKNDC LTHAFWADAK ARTSYYYFGD AVTLETSFVE NEDLLPLVMF SGVNHHLQCQ  420
MFGCALLIDF TEASYIWLFQ NWIAAMGSHH PTSLTTVYNE AMGSAIAKVF PQTHHLYFTA  480
DILKRSKDIL ADIYFRCASF ERELYACVNE PKTIEMFELS WRKVLDKYDL DDNLWLQSLY  540
RIRQKWVPVY FKDVFTAEFS ASQRPESLRN IFEKYFNRRT ALPVFISLFE HLMAGWSERE  600
AVEDLASSFT RPVLRTPSNM MKQVSEIYTT TVFNILEEEF IASLGYYISG LDNDGLIAVY  660
SVTKEDTEAT CRVRYDTSGN IAKCSCCKFE SCGILCRHIL RVFLALDVRT IADVYILKRW  720
TKEAKNGFVL DECLRYSELH RDALRYAREG STSGEVFTFA QQTLQVAFAE VVQMKQESFS  780
QCTMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G39100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915320.0AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650502.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015691162.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3LS840.0J3LS84_ORYBR; Uncharacterized protein
STRINGOB03G39100.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-130FAR1-related sequence 5