PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G36610.1 | ||||||||
Common Name | LOC102714908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 341aa MW: 36841.1 Da PI: 6.5828 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.5e-10 | 253 | 285 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps+ e++ LA+++gL+++q+++WF N+R ++ OB03G36610.1 253 PYPSEMEKAALAESTGLDKKQITNWFINQRKRH 285 8*****************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.3E-19 | 64 | 108 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.9E-18 | 66 | 104 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-25 | 117 | 168 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.3E-21 | 121 | 166 | IPR005541 | KNOX2 |
SMART | SM00389 | 1.4E-10 | 224 | 292 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.548 | 225 | 288 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-17 | 227 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 232 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.47E-12 | 239 | 288 | No hit | No description |
Pfam | PF05920 | 1.8E-16 | 245 | 284 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 263 | 286 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEQLHLLLAN GGAKDTSTAP FCSARDFTYA ASPPPALRPA SGRQSNHGGG GGGGQSSSPL 60 PSEAILKAKI MSHPLYPSLL RAFVDCRKVG APLDVAGRLS SLTDDLQSNS GDWRRPAELQ 120 PAADHELDQF METYCYMLTR YGQELGRPIQ EAEEFFRGIE AQIESLALDD VSCEGDASSE 180 DENAALPENG GGGGGAAFGD TEVTTSHLLN KYSGYMSSLL SEISRKKKNS TGHLPGKARQ 240 KLLHWWHLHY RWPYPSEMEK AALAESTGLD KKQITNWFIN QRKRHWKPTP AAAAAMDVFL 300 HPPYGASSSS SAALRPVEGG GGSWQRCFEF DGGCAYPRGG P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G36610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035205 | 4e-70 | BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds. | |||
GenBank | BT040622 | 4e-70 | BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds. | |||
GenBank | KJ727571 | 4e-70 | KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651679.1 | 0.0 | PREDICTED: putative homeobox protein knotted-1-like 5 | ||||
Swissprot | Q75LX9 | 1e-127 | KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5 | ||||
TrEMBL | J3LRI5 | 0.0 | J3LRI5_ORYBR; Uncharacterized protein | ||||
STRING | OB03G36610.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4746 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 7e-67 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Entrez Gene | 102714908 |