PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G36530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 271aa    MW: 29211.8 Da    PI: 6.0419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G36530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-1593139455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  OB03G36530.1  93 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 139
                   699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1881150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.40689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1392139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1993150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.15E-1694143No hitNo description
SMARTSM003532.6E-1695144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDDSSLFMEW AMETLQHLHS PPEPPAPGGY SGGVGDAFPS LQALRDLASQ NGMAPPEPAA  60
HEGHRASNSW SSGDTDSGGG GTGPSSAAPY AQEHIIAERK RREKINQRFI ELSTVIPGLK  120
KMDKATILSD AVRYVKELQE KLSELEDQNG RSVESSLPEI EAKISHGNVM VRIHCESGKG  180
LVVRLLAAVE GLHLAITHTN VMPFPACTAI ITIMAKECKS SKIRKVDDGF SVTAENIVGK  240
LNTVLQQNSR NNNNTTAEET RSCQQQETAA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1294165979Transcription factor MYC2
5gnj_B2e-1294165979Transcription factor MYC2
5gnj_E2e-1294165979Transcription factor MYC2
5gnj_F2e-1294165979Transcription factor MYC2
5gnj_G2e-1294165979Transcription factor MYC2
5gnj_I2e-1294165979Transcription factor MYC2
5gnj_M2e-1294165979Transcription factor MYC2
5gnj_N2e-1294165979Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERKRRE
298103RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G36530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071903e-92AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588623e-92HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690010.11e-179PREDICTED: transcription factor bHLH25-like
TrEMBLJ3LRH70.0J3LRH7_ORYBR; Uncharacterized protein
STRINGOB03G36530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-35bHLH family protein