PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G35830.1
Common NameLOC102707109
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 140aa    MW: 15149.5 Da    PI: 7.1425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G35830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-2250107258
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                   +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp++ + ++Y g H+h
  OB03G35830.1  50 EDGYEWKKYGQKFIKNIQKNRSYFRCREQRCGAKKKVEWHPHDPSLnLRVVYDGAHQH 107
                   7*******************************************98579********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.05144110IPR003657WRKY domain
SuperFamilySSF1182901.96E-2145110IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-2446110IPR003657WRKY domain
SMARTSM007742.8E-2349109IPR003657WRKY domain
PfamPF031061.1E-2050107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MASNSQPTTT TGAGGRNGHG DKEEAEQTPP PPEEATTVGG GDGVQFVMPE DGYEWKKYGQ  60
KFIKNIQKNR SYFRCREQRC GAKKKVEWHP HDPSLNLRVV YDGAHQHGSP SAAGEEGGGG  120
ATANQYDLST QYFGGGPRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G35830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338596e-58AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149596e-58AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126116e-58CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651653.11e-101PREDICTED: probable WRKY transcription factor 2
TrEMBLJ3LRA71e-100J3LRA7_ORYBR; Uncharacterized protein
STRINGOB03G35830.11e-101(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-16WRKY DNA-binding protein 71