PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G35710.1

Common Name

LOC102705995

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1068aa MW: 116667 Da PI: 5.8117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G35710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	103.1	2.7e-32	78	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle+eHn OB03G35710.1 78 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaggsgedSARGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLETEHN 174 ******************************************************999999******************************* PP FAR1 87 Helap 91 H+l+p OB03G35710.1 175 HPLVP 179 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-30	78	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-20	302	387	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-9	563	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.002	575	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-5	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MERGGGGGGV AGSEQGTPES EMGDGDNDSV DYAAEMEVDA SGNGAAADAA YAARAGAYDG 60 VDPFEGMEFD DEEDAWTFYN VYAHRVGFST RISVMHRSRR DGSIMSRQFV CAKEGFRTYR 120 GKNEVSPVAG GSGEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWAVTKLE TEHNHPLVPP 180 NQAHCLRPHK PLSECGKQRA FGVPRNGGML LAIEPPPTPV SPPVLQISVP QGAPSYTRDC 240 IGDHVRVILD YVKRMQAEDP AFFYAMQFID GHPVGNIFWA DARARMAYKH FGDAVFLDDY 300 CKRSKFQLPL VAFTGVNHHC QPVLFGCAII GDNSEASFAW LFETLLLAMS GQHPDSLTTE 360 HDSDIQSAAF KVLPRTRHRF CRWHILNEAH DRLSHLSNAF PSLHEELVNC INMSETIDEF 420 EANYMALITK VGLGNSEWLY SMYNCRQHWV PVYLRDTFFG DESSKEECAS RSSFFDGYIS 480 SKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSLPEIKTS SPIEKRGADL YTRSMFLKFQ 540 QELVDASVSS LEIIKEDGKS RIYKVTKSAG SEKSHTVKFN SLENSATCSC QMFEHLGIVC 600 RHILTVFGTH CVSSLPSQYI VKRWTKYAME RNPDKKMDEV SKVNEPKEEQ KSGVEDGEQS 660 QTWRYNSLCR EALRYAEEGA SSVEVYIVAM QALQEATNKV NMAKRGIGQV SPNAPLAVMP 720 IAAQPPTEGF RKAQEIGFNQ RKKRRRNSNN KVTENSSNQL MYLQQPVNFL FVAPGTSSGP 780 QGPNQIVAAV PVSSSVPHGQ TSRANHSTDG NTTPCSVAAQ KHSDLPSRNA SAPSFGNVVQ 840 EGEIKSSGFS SQIKESHELS QGNGSKGNSV ASSTPSPQLV TVPVGLCLPS MDSSRTSADA 900 MNSTNSGSMN SNGNASFGLC QSQSTHSQTR TLADNADPRP FPEGSSIRAA AIAAGARIAS 960 PSDAASIIKA AQSKGAIHIR PVEGVSNYLK PLAPQPLSSL PPGNIPSSVH ASSSQAQPGR 1020 CSFGDSAAAK DAIFGSTDSS DEDEYDEDDD TDDNDEDEGI TGDEVEQE

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MERGGGGGGV AGSEQGTPES EMGDGDNDSV DYAAEMEVDA SGNGAAADAA YAARAGAYDG  60
VDPFEGMEFD DEEDAWTFYN VYAHRVGFST RISVMHRSRR DGSIMSRQFV CAKEGFRTYR  120
GKNEVSPVAG GSGEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWAVTKLE TEHNHPLVPP  180
NQAHCLRPHK PLSECGKQRA FGVPRNGGML LAIEPPPTPV SPPVLQISVP QGAPSYTRDC  240
IGDHVRVILD YVKRMQAEDP AFFYAMQFID GHPVGNIFWA DARARMAYKH FGDAVFLDDY  300
CKRSKFQLPL VAFTGVNHHC QPVLFGCAII GDNSEASFAW LFETLLLAMS GQHPDSLTTE  360
HDSDIQSAAF KVLPRTRHRF CRWHILNEAH DRLSHLSNAF PSLHEELVNC INMSETIDEF  420
EANYMALITK VGLGNSEWLY SMYNCRQHWV PVYLRDTFFG DESSKEECAS RSSFFDGYIS  480
SKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSLPEIKTS SPIEKRGADL YTRSMFLKFQ  540
QELVDASVSS LEIIKEDGKS RIYKVTKSAG SEKSHTVKFN SLENSATCSC QMFEHLGIVC  600
RHILTVFGTH CVSSLPSQYI VKRWTKYAME RNPDKKMDEV SKVNEPKEEQ KSGVEDGEQS  660
QTWRYNSLCR EALRYAEEGA SSVEVYIVAM QALQEATNKV NMAKRGIGQV SPNAPLAVMP  720
IAAQPPTEGF RKAQEIGFNQ RKKRRRNSNN KVTENSSNQL MYLQQPVNFL FVAPGTSSGP  780
QGPNQIVAAV PVSSSVPHGQ TSRANHSTDG NTTPCSVAAQ KHSDLPSRNA SAPSFGNVVQ  840
EGEIKSSGFS SQIKESHELS QGNGSKGNSV ASSTPSPQLV TVPVGLCLPS MDSSRTSADA  900
MNSTNSGSMN SNGNASFGLC QSQSTHSQTR TLADNADPRP FPEGSSIRAA AIAAGARIAS  960
PSDAASIIKA AQSKGAIHIR PVEGVSNYLK PLAPQPLSSL PPGNIPSSVH ASSSQAQPGR  1020
CSFGDSAAAK DAIFGSTDSS DEDEYDEDDD TDDNDEDEGI TGDEVEQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	739	745	QRKKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G35710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120778	0.0	AK120778.1 Oryza sativa Japonica Group cDNA clone:J023009J07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651650.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	J3LR95	0.0	J3LR95_ORYBR; Uncharacterized protein
STRING	OB03G35710.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-165	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	102705995