PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G34830.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 789aa MW: 87028.8 Da PI: 7.7479

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G34830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28.4	3.2e-09	533	559	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfaa+++Cs +C+C +C+N+++ OB03G34830.1 533 KSYCECFAAKVHCSGSCSCRGCFNDDS 559 99**********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.377	525	613	IPR005172	CRC domain
SMART	SM01114	7.4E-4	526	560	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.6E-6	533	557	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MTGLDWCGCQ MFADRVSVSG QMRLIDGGNA FCSRSIGRWD QQQHHTTKTP KNVMVPLSLI 60 QERKWFSQGD SPCERDKILH LQNSPVFDFI KTLSPIATSK RLYTAPNAQL FKSSDLAHTS 120 SIFTSPQVTD SRKGSKISIG NTSARLSQEG LCSCCHTTQI GTSCYIKQSE VMTIPSENCS 180 TDCSLSQAYH DSPGNASILR NNLPQRIQLS SNTLGNDKRE DDISGKTDHA KLPFFDHSGL 240 DKLEQSTSGI NIQKRDLTKK HNDELACNWD YLNIQCGSSV VPTPNLRLDT SAQLVETPRN 300 DNVMHSKSLL PITQTNLENA GRKLFHGSAD CYEQSLVDNV SSNYVSGIPP CHSLSQLVQD 360 HQFIDTLEVP SDCMAMHHSA VTHYLRGSCN RNLFNEKVRD PIMSVHRVST PCSPPRTTRW 420 RSYSDDNYLN PVVSPVCPLP GLDLHFDALS QMPKDMVLGD SKATENPFKK KKSAVNSTLL 480 TSEHNSEMNS VVPGNQPVSN TNEMNTSTQN NYSSQATTTT NAGDSGQENP KRKSYCECFA 540 AKVHCSGSCS CRGCFNDDSH EETILSTRSR IESRNPLAFA PKVIRSCGSG LAFGSGVGCS 600 MSCRCESCKN SFGIRKGIQL LDNEETERVD PKKKAPLKEE LPWIIKLNAF GETYRVLPND 660 ILCTTPSIES HRALVLPPSE CSKTLLSSTT FSQLYSPSKT DVLPSPYRSY TQMILENDTS 720 ADMQQGDSSC TAGFKVVSPN KKRVSPMRSR SDRQLVLNSI PSFPSLTGDA CQQLLKPSKA 780 EVGDRLFVS

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MTGLDWCGCQ MFADRVSVSG QMRLIDGGNA FCSRSIGRWD QQQHHTTKTP KNVMVPLSLI  60
QERKWFSQGD SPCERDKILH LQNSPVFDFI KTLSPIATSK RLYTAPNAQL FKSSDLAHTS  120
SIFTSPQVTD SRKGSKISIG NTSARLSQEG LCSCCHTTQI GTSCYIKQSE VMTIPSENCS  180
TDCSLSQAYH DSPGNASILR NNLPQRIQLS SNTLGNDKRE DDISGKTDHA KLPFFDHSGL  240
DKLEQSTSGI NIQKRDLTKK HNDELACNWD YLNIQCGSSV VPTPNLRLDT SAQLVETPRN  300
DNVMHSKSLL PITQTNLENA GRKLFHGSAD CYEQSLVDNV SSNYVSGIPP CHSLSQLVQD  360
HQFIDTLEVP SDCMAMHHSA VTHYLRGSCN RNLFNEKVRD PIMSVHRVST PCSPPRTTRW  420
RSYSDDNYLN PVVSPVCPLP GLDLHFDALS QMPKDMVLGD SKATENPFKK KKSAVNSTLL  480
TSEHNSEMNS VVPGNQPVSN TNEMNTSTQN NYSSQATTTT NAGDSGQENP KRKSYCECFA  540
AKVHCSGSCS CRGCFNDDSH EETILSTRSR IESRNPLAFA PKVIRSCGSG LAFGSGVGCS  600
MSCRCESCKN SFGIRKGIQL LDNEETERVD PKKKAPLKEE LPWIIKLNAF GETYRVLPND  660
ILCTTPSIES HRALVLPPSE CSKTLLSSTT FSQLYSPSKT DVLPSPYRSY TQMILENDTS  720
ADMQQGDSSC TAGFKVVSPN KKRVSPMRSR SDRQLVLNSI PSFPSLTGDA CQQLLKPSKA  780
EVGDRLFVS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G34830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	J3LR07	0.0	J3LR07_ORYBR; Uncharacterized protein
STRING	OB03G34830.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-33	Tesmin/TSO1-like CXC domain-containing protein