PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34300.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 560aa    MW: 62550.4 Da    PI: 8.6401
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16351171098
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   + ++++++lp +f++++gg+   s t++l++++g  + v++    +++++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +++
  OB03G34300.1  35 ADSRHCMILPDRFVNHFGGD--ISGTIKLQSPNGILYVVEV--IECKNKTVLKCGWQAFVDAHHIQENDSLLFRHIENSRF--EVLILD 117
                   457788********888988..6779***************..888889***************************99999..666665 PP
2B345.81.1e-142743581599
                   -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   +lv++  +a+ h   +++s t+tl++  ++++W v +  r++s+  +l++ W +Fvk+n+++e D++vF  ++  s+f+++v+++r+
  OB03G34300.1 274 CLVISSGYAAVHF--PHTSGTVTLQSpCRSKKWHVMFHKRRGSRLNILRGHWADFVKDNRVQEQDICVFVPMKGsSSFTFMVHLLRA 358
                   4899999998886..345669*****5677*******77777777*************************77555********9986 PP
3B350.83e-164725561499
                   T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   ++l l  ++a++ +++   ++  ++ ++sg++W   +++r +s+r +l+ GW +Fv++n+L++gD+++++l+++ ++ ++ v+++rk
  OB03G34300.1 472 SQLELGARYAAAVDLP-GMGRRAVVLQRSGQRWATVMQIRSGSRRLLLG-GWHSFVRDNRLRVGDICLLELKKDeRKLTMAVHICRK 556
                   5566777777777655.45567889999*********999999999888.**********************999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-2322121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-2024120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.02626119IPR003340B3 DNA binding domain
CDDcd100174.92E-1928117No hitNo description
SMARTSM010195.9E-1229119IPR003340B3 DNA binding domain
PfamPF023629.6E-1536116IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-19252357IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-18252358IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-17259354No hitNo description
SMARTSM010190.0018259359IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406260359IPR003340B3 DNA binding domain
PfamPF023623.8E-13274358IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17444555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16450553IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-18454555No hitNo description
SMARTSM010199.2E-7456557IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97459557IPR003340B3 DNA binding domain
PfamPF023624.4E-14472556IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAGSGSRMKR SCACCQGYLE HLDGKMSCFL RRMTADSRHC MILPDRFVNH FGGDISGTIK  60
LQSPNGILYV VEVIECKNKT VLKCGWQAFV DAHHIQENDS LLFRHIENSR FEVLILDSND  120
CEKVFSCSGI KNTCSIQGKN VDPASISGSS CDDTAESSES EGFARYQNGS FSHRRKTAKL  180
ASSSSSPEDS GKPFVKLFLV KFCTGEDSSS DSGHEYVDSG DLETSQEPYV LCRRSHLSKV  240
QEEKVDALIE EIHPEITVFV AIMRKSNVQL PAPCLVISSG YAAVHFPHTS GTVTLQSPCR  300
SKKWHVMFHK RRGSRLNILR GHWADFVKDN RVQEQDICVF VPMKGSSSFT FMVHLLRAAA  360
TYPKGGTVID RIGSSLGIKD LKSASDISIK EEPIEEENVF SKSNRDGVSD ESQESEDSEG  420
PADPPYILPC KNRLSRLQKK IVQERVRSIQ SRVPIYVAIM KKSNVGLIAS RSQLELGARY  480
AAAVDLPGMG RRAVVLQRSG QRWATVMQIR SGSRRLLLGG WHSFVRDNRL RVGDICLLEL  540
KKDERKLTMA VHICRKEQFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651606.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLJ3LQV40.0J3LQV4_ORYBR; Uncharacterized protein
STRINGOB03G34300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]