PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G34250.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 408aa MW: 46643 Da PI: 8.0438

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G34250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.3	3.7e-11	135	176	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++++r++tr++C a++++ ++++gkw+v+ +++eHnH+l OB03G34250.1 135 KPKENQRSTTRCQCPARIRLLNNTEGKWYVKFFVNEHNHKLL 176 578899**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-8	135	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-24	299	390	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEEMEHVGSL LELMASMHQP IQSATLRYHP MPCPHCCFVR FRRFPLGLIP FSLQQIYLPS 60 ENGLLALDAD LSPSTICIGG NLINDRIRLC IPLLTAPITL DRIARASNAD TLPIMSSEEG 120 TPPQYVMLDD NCEGKPKENQ RSTTRCQCPA RIRLLNNTEG KWYVKFFVNE HNHKLLKVVG 180 EKRHIFSHKS IDPAVKDMIR HLRKNNVSLT KVNCILGSLH GSMDVVLFTK KSVRTICVEI 240 AQENLHDDIR KTMELFQDLS VSDPDFKFCV QLDNENKIKS LMWPSGRSHR MYSHFGDMVT 300 FDTTYQTNFY DMPFGMFLGI NNPFQSVLFA GVLLGKDTDS FKWAFSEFAK MMGGPPLGTI 360 LTDQDLAMVA AIREVYPGTV HRWCKWHVLK DTRDEIGHVY VNNKNFRK

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEEMEHVGSL LELMASMHQP IQSATLRYHP MPCPHCCFVR FRRFPLGLIP FSLQQIYLPS  60
ENGLLALDAD LSPSTICIGG NLINDRIRLC IPLLTAPITL DRIARASNAD TLPIMSSEEG  120
TPPQYVMLDD NCEGKPKENQ RSTTRCQCPA RIRLLNNTEG KWYVKFFVNE HNHKLLKVVG  180
EKRHIFSHKS IDPAVKDMIR HLRKNNVSLT KVNCILGSLH GSMDVVLFTK KSVRTICVEI  240
AQENLHDDIR KTMELFQDLS VSDPDFKFCV QLDNENKIKS LMWPSGRSHR MYSHFGDMVT  300
FDTTYQTNFY DMPFGMFLGI NNPFQSVLFA GVLLGKDTDS FKWAFSEFAK MMGGPPLGTI  360
LTDQDLAMVA AIREVYPGTV HRWCKWHVLK DTRDEIGHVY VNNKNFRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G34250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3LQU9	0.0	J3LQU9_ORYBR; Uncharacterized protein
STRING	OB03G34250.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-44	FAR1-related sequence 5