PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G33980.1 | ||||||||
Common Name | LOC102721910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 23971 Da PI: 9.0325 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ Fs+ L H +H OB03G33980.1 78 HRCSVCGRAFSSYQALGGHKTSH 100 79**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.21E-10 | 77 | 100 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-12 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.21E-10 | 143 | 170 | No hit | No description |
Pfam | PF13912 | 3.0E-14 | 147 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.043 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVSMAVEKVL DGAAAATMSS PASDAEGWSK RKRSRRHRAA APTEEYLALS LLMLARGHRD 60 DRPAVPAARQ EEEEKQQHRC SVCGRAFSSY QALGGHKTSH RPRTPTKTAV LVPADDEPAA 120 LAATRTTASP SPAASSSNSG SGGGSKAHEC SVCNKTFPTG QALGGHKRCH YEGPIGSSAG 180 RGFDLNLPAA LPADVITDRR LPLPAAEEEE EVLSPLAFKK PRLMIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G33980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135500 | 1e-41 | AC135500.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence. | |||
GenBank | AC136972 | 1e-41 | AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence. | |||
GenBank | AK287943 | 1e-41 | AK287943.1 Oryza sativa Japonica Group cDNA, clone: J075021K20, full insert sequence. | |||
GenBank | AP014959 | 1e-41 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY289189 | 1e-41 | AY289189.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor OsZFP34 mRNA, complete cds. | |||
GenBank | AY305868 | 1e-41 | AY305868.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP31 (ZFP31) mRNA, complete cds. | |||
GenBank | CP012611 | 1e-41 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | EU717839 | 1e-41 | EU717839.1 Oryza sativa Indica Group cultivar PA64s C2H2 zinc finger (zf) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650277.2 | 1e-164 | PREDICTED: zinc finger protein 1-like | ||||
Swissprot | Q42430 | 8e-38 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | J3LQS2 | 1e-163 | J3LQS2_ORYBR; Uncharacterized protein | ||||
STRING | OB03G33980.1 | 1e-164 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 3e-28 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 102721910 |