PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G33740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 348aa    MW: 38662.9 Da    PI: 8.4959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G33740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111030323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C+ C++sF++  +L  H+++H
  OB03G33740.1 10 CKLCNRSFPSYNSLGGHMNLH 30
                  9******************99 PP
2zf-C2H211.60.00085258279223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C  Cgk+F +   L  H+++H
  OB03G33740.1 258 DCRLCGKVFATGFALGGHMSSH 279
                   6******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035512830IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.06E-5934No hitNo description
PROSITE profilePS501579.7431035IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
PfamPF139121.7E-71030IPR007087Zinc finger, C2H2
SMARTSM003553.789111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.22489119IPR007087Zinc finger, C2H2
SuperFamilySSF576677.32E-590111No hitNo description
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576677.32E-5252279No hitNo description
SMARTSM003550.23257279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847257284IPR007087Zinc finger, C2H2
PfamPF139124.5E-7257281IPR007087Zinc finger, C2H2
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAPAEGKPWC KLCNRSFPSY NSLGGHMNLH STRRKKKKKK PRPMSPRESP ITGASGRYGF  60
RERQQRQVAV CLSDSTSSDD EPWTLAPKTE CQLCFRVFHS FHGLSMHMKA HAHHHGRKMV  120
MLEHKASRKL CAWSSADGDN DFTAVCYAPA KKPRSRRIRM DMFPAPVMMT HGAEAVDAAR  180
VLLMLSEDAD KYSASNNDLE VNGVLEYSLQ KTEIGLSCYR PGVLEGSELM KQEISSSDDE  240
ETKFGSLSDV LKATATHDCR LCGKVFATGF ALGGHMSSHS ASAHENAATF HKTAVHPKRK  300
QLEVDNELHE LNLPALGNWD CSSTRTESEL NPWLVAGSLQ SERMMGVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238RRKKKKK
23339RKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G33740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690673.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLJ3LQP80.0J3LQP8_ORYBR; Uncharacterized protein
STRINGOB03G33740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921