PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G33430.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 702aa MW: 80104.9 Da PI: 7.363

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G33430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.1	2.3e-105	322	694	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL++cA+av++++++la+ +L+ ++++asp+gd +qR+a ++++ L arl++++s++y+++ +++ + ++ l++++l ++P+l+ s+ OB03G33430.1 322 LRTLLIHCAQAVAASNHSLASDILKIIRHHASPTGDDTQRVALCLANSLDARLSGTGSQTYHKFITKRRN---AVDILKVFHLCIATCPFLRASYYF 415 6789*******************************************************999888887...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Ilea +g+++vHiiDf+i G+QWp+Ll++La+ ++g+ ++RiTg++ e+g +++ +++g rLa++A+ +++pfe++ + ++++e+++le OB03G33430.1 416 SNRTILEASKGKSQVHIIDFGICFGFQWPSLLEQLANVEDGSRKVRITGIELLEPGfrPHTASKNIGLRLADYASMFNIPFEYQHISSNKWETISLE 512 ************************************************999999***********************9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +++++++E+l++n+++++++l de+ s++s+rd+vL++++ ++Pk++++ + +++ + Fl+rf e ++++++lfd+l++++pr++e+r+ +Erel OB03G33430.1 513 DFNIEKDEVLIINCIYRMKNLGDETISVNSARDKVLNTIRMMKPKIFIHGVLNGSYGVPFFLTRFKEVMYHFTSLFDMLDKTIPRDNETRTIIEREL 609 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ i nv+aceg+er+er e+++kW+ r +aG+ ++pl+ + k+ + ++rk + + v+ee+++lvlgWk+r ++++S W+ OB03G33430.1 610 FQYMILNVIACEGSERTERPENYKKWKVRNLKAGLVQIPLNLAISKETQDMVRKGFHKDFLVDEEDQWLVLGWKGRIIYAISTWK 694 ***********************************************99987777***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.605	296	674	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-103	322	694	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MGKEAIPAPM RNPANRSNNS ELFLNPPIPM NYCDLQSAVS KKDDHVALNI CSKLYHPQSY 60 EDNGDATTDW CQTSAGGDRQ ESSINSDITL SYIDKMLIQD TSLQAMEEPF YELLGQKYPV 120 LPQQQPLYGW YHLQNLSANI DKSNGKSCNI CSITRTTNIS SSMNCSDNFQ GFKYPWSLAT 180 LTREAEQFYH DSNRMDVGLK VDEFSISEKP RQDNCSLQID ARYIRKHPLY EVGNRNNYPC 240 IEDLDLLEGR SNKQYAIYSD ESIRDEMFDK VLLSSNNKSL DEGISLSKAM TSNTTKSSQI 300 GQTSACRKTR GKRTQKRDVV DLRTLLIHCA QAVAASNHSL ASDILKIIRH HASPTGDDTQ 360 RVALCLANSL DARLSGTGSQ TYHKFITKRR NAVDILKVFH LCIATCPFLR ASYYFSNRTI 420 LEASKGKSQV HIIDFGICFG FQWPSLLEQL ANVEDGSRKV RITGIELLEP GFRPHTASKN 480 IGLRLADYAS MFNIPFEYQH ISSNKWETIS LEDFNIEKDE VLIINCIYRM KNLGDETISV 540 NSARDKVLNT IRMMKPKIFI HGVLNGSYGV PFFLTRFKEV MYHFTSLFDM LDKTIPRDNE 600 TRTIIERELF QYMILNVIAC EGSERTERPE NYKKWKVRNL KAGLVQIPLN LAISKETQDM 660 VRKGFHKDFL VDEEDQWLVL GWKGRIIYAI STWKPSDSDH GD

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MGKEAIPAPM RNPANRSNNS ELFLNPPIPM NYCDLQSAVS KKDDHVALNI CSKLYHPQSY  60
EDNGDATTDW CQTSAGGDRQ ESSINSDITL SYIDKMLIQD TSLQAMEEPF YELLGQKYPV  120
LPQQQPLYGW YHLQNLSANI DKSNGKSCNI CSITRTTNIS SSMNCSDNFQ GFKYPWSLAT  180
LTREAEQFYH DSNRMDVGLK VDEFSISEKP RQDNCSLQID ARYIRKHPLY EVGNRNNYPC  240
IEDLDLLEGR SNKQYAIYSD ESIRDEMFDK VLLSSNNKSL DEGISLSKAM TSNTTKSSQI  300
GQTSACRKTR GKRTQKRDVV DLRTLLIHCA QAVAASNHSL ASDILKIIRH HASPTGDDTQ  360
RVALCLANSL DARLSGTGSQ TYHKFITKRR NAVDILKVFH LCIATCPFLR ASYYFSNRTI  420
LEASKGKSQV HIIDFGICFG FQWPSLLEQL ANVEDGSRKV RITGIELLEP GFRPHTASKN  480
IGLRLADYAS MFNIPFEYQH ISSNKWETIS LEDFNIEKDE VLIINCIYRM KNLGDETISV  540
NSARDKVLNT IRMMKPKIFI HGVLNGSYGV PFFLTRFKEV MYHFTSLFDM LDKTIPRDNE  600
TRTIIERELF QYMILNVIAC EGSERTERPE NYKKWKVRNL KAGLVQIPLN LAISKETQDM  660
VRKGFHKDFL VDEEDQWLVL GWKGRIIYAI STWKPSDSDH GD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-41	326	694	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G33430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	J3LQL7	0.0	J3LQL7_ORYBR; Uncharacterized protein
STRING	OB03G33430.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-152	GRAS family protein