PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G33030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 245aa    MW: 26265 Da    PI: 8.8551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G33030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.5e-161050242
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                  ri n+ +r  tf kR++g+ KKA+EL +LC ++++++++++
  OB03G33030.1 10 RIANDAQRRATFRKRLKGLSKKASELATLCSVDACLVVYGE 50
                  89*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.255150IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-15161IPR002100Transcription factor, MADS-box
CDDcd002668.08E-27286No hitNo description
SuperFamilySSF554553.92E-22395IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-161050IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MARNKVKLQR IANDAQRRAT FRKRLKGLSK KASELATLCS VDACLVVYGE GEAEAAEVWP  60
SAPEARGVLE RFKAMPQLDR YKKMTDLEGL LRQRVEKLQE QLHRARIDAD QSETKLLLAE  120
ALQALRGGGG GGCGLERLTI EQLTSVGWMA GARLRTVSDR LETLRGQAAL VPSVPTTTTT  180
QAPDHLLGMV VSPHAITGYT AMAEDGGLGG TAAPSGDMDM VVQASSSGTA GFSWASQGFF  240
SFPSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G33030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651572.21e-121PREDICTED: uncharacterized protein LOC102703571
TrEMBLJ3LQH71e-177J3LQH7_ORYBR; Uncharacterized protein
STRINGOB03G33030.11e-178(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-25M-type_MADS family protein