PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G32840.1
Common NameLOC102719470
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 478aa    MW: 50290 Da    PI: 6.1662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G32840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-164693148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed  lv+ v+q+G g+W+++ r  g+ R++k+c++rw ++l
     OB03G32840.1 46 KGPWTTAEDAMLVQHVRQHGEGNWNAVQRVTGLLRCGKSCRLRWTNHL 93
                     79******************************99***********996 PP
2Myb_DNA-binding513.3e-1699142146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
     OB03G32840.1  99 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 142
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7114193IPR017930Myb domain
SMARTSM007174.2E-144595IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-2845140IPR009057Homeodomain-like
PfamPF002496.6E-144693IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2147100IPR009057Homeodomain-like
CDDcd001672.81E-114893No hitNo description
PROSITE profilePS5129422.5594148IPR017930Myb domain
SMARTSM007178.0E-1598146IPR001005SANT/Myb domain
PfamPF002493.7E-1599142IPR001005SANT/Myb domain
CDDcd001676.64E-11101142No hitNo description
Gene3DG3DSA:1.10.10.603.0E-24101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEEMIKPAPA SSGSEEEKEE VVPAGSGERH EEQEGEAAAL PVVLKKGPWT TAEDAMLVQH  60
VRQHGEGNWN AVQRVTGLLR CGKSCRLRWT NHLRPNLKKG SFSPDEELLI AQLHAQLGNK  120
WARMASHLPG RTDNEIKNYW NTRTKRRQRA GLPVYPPEVQ LHLAFAKRCR YDDFSSPQQS  180
AGSNVLSLDA ADAASAAYAS ARPPPLDLAG QLAMASRPVQ FTPFSAPSSP WGKPFPRTAH  240
FFQFPHSSPV SPTTPTGPVH PLTPELSLGY ALHGGDRTRL PPVSPSPGAR LELPSSQLRP  300
ATAIPPSTAS IGAAIATAAA TGCLAGGSLH DHPNAASLEA MLQELHDAIK IEPPAPPANR  360
ATGEGGGGGD PCGVSGDNKP EVELKDDIET LFDLIIPVTF PAPPEPAAAT ANHSGSVSQH  420
SSDDQDLHSN AHVALHLPIL TGSGGGGGGG GGTGSSEHDW SLDDDGACQW NNMSGGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-294414725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442452SGGGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G32840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425371e-151BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275321e-151KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650271.10.0PREDICTED: myb-related protein P-like
TrEMBLJ3LQF80.0J3LQF8_ORYBR; Uncharacterized protein
STRINGOB03G32840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-66myb domain protein 101