PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31780.1
Common NameLOC102709722
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 213aa    MW: 22420.5 Da    PI: 8.884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000227294123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cgk F +   L  H ++H
  OB03G31780.1 72 FRCTVCGKAFASYQALGGHKSSH 94
                  89**********99999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-137196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-47295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-87294No hitNo description
PROSITE profilePS5015710.8247299IPR007087Zinc finger, C2H2
SMARTSM003550.0227294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-8123150No hitNo description
PROSITE profilePS501579.39128155IPR007087Zinc finger, C2H2
PfamPF139126.4E-11128151IPR007087Zinc finger, C2H2
SMARTSM003550.44128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVAAMQALLE PTVLSLGLPT APAIKKEDYL AICLAALAGT RAGKALVPVG VRDHPQQAKW  60
CPAPAPAEEL RFRCTVCGKA FASYQALGGH KSSHRKPPTG DHYYAATAAQ QASAGDSEDS  120
ASSATGPHRC TICRRSFATG QALGGHKRCH YWDGTSVPVS VSASASASGT SSAVRNFDLN  180
LMPLPESAAG MKRWAEEEEV QSPLPVKKLR LSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G31780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1068871e-143AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAC1478031e-143AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankAK0598391e-143AK059839.1 Oryza sativa Japonica Group cDNA clone:006-206-D03, full insert sequence.
GenBankAP0149591e-143AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-143CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8304151e-143CT830415.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104A19, full insert sequence.
GenBankHQ8588231e-143HQ858823.1 Oryza sativa Japonica Group isolate UT1321 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650238.11e-156PREDICTED: zinc finger protein 1-like
SwissprotQ75KE59e-95ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLJ3LQ521e-154J3LQ52_ORYBR; Uncharacterized protein
STRINGOB03G31780.11e-155(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-29salt tolerance zinc finger
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]