PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB03G31560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 21951.2 Da PI: 8.4196 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.5 | 1.6e-26 | 2 | 112 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r +++sl+yeA r+ +Pv+Gavg+++++ OB03G31560.1 2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRpgtyvcmyaCPLFQSLLYEAAGRTINPVHGAVGLLWTG 98 6*********************9998656778***************************999999998889************************** PP DUF260 84 qqqleqlkaelall 97 +++l+q++++++l+ OB03G31560.1 99 NWHLCQAAVDTVLR 112 ********998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.586 | 1 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-21 | 2 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PGTYVCMYAC PLFQSLLYEA AGRTINPVHG AVGLLWTGNW HLCQAAVDTV LRGGSIGPLP 120 ELAGAGGDLY GAARRNGGWS TFSTAKRVRK AEVPAAPSCD LGLCLSPGSP PAAGERRAAL 180 RRPGTPSMSS DESVTTTGGE RDPVLLNLFV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB03G31560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU405903 | 1e-140 | CU405903.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S102O12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650230.1 | 1e-140 | PREDICTED: LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 2e-68 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | J3LQ30 | 1e-150 | J3LQ30_ORYBR; Uncharacterized protein | ||||
STRING | OB03G31560.1 | 1e-151 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-67 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|