PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G31080.1
Common NameLOC102701901
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 425aa    MW: 45243.9 Da    PI: 6.7381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G31080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063274296123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ Cg++F +   L  H  +H
  OB03G31080.1 274 YECHGCGRVFQSYQALGGHRASH 296
                   99********9999988888777 PP
2zf-C2H211.10.0012362384123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++Cp C+k F +   L  H r+H
  OB03G31080.1 362 FVCPVCSKEFGSGQALGGHKRSH 384
                   89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6991744IPR007087Zinc finger, C2H2
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-71739No hitNo description
PfamPF139127.6E-51739IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-7269296No hitNo description
PfamPF139126.8E-11273298IPR007087Zinc finger, C2H2
SMARTSM003550.25274296IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076274301IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
SMARTSM003550.056362384IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201362385IPR007087Zinc finger, C2H2
PfamPF139125.6E-12362385IPR007087Zinc finger, C2H2
PROSITE patternPS000280364384IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDGDVLVVSS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEMEGADAD DGDGRIERRW  60
MMQSGARCAN AGAGASGGGG YGLRENPKKT RRLSGSGGHG GGDDDDEEDG GGDPCRYRGD  120
LLSSSSCRTV LGRARGHAPA GGVYADDSEN AGVDADDDGD RETLVMAAPR RRPRSMRVPA  180
PARDRFDDNE QLFVAQCLLK LSRDDGGSSR RAKDEDEYLP HKYNKYDDDI ISDDDDLELS  240
LSSQHTDIKM NSNGNGKKKS VASRRLSGEK RGRYECHGCG RVFQSYQALG GHRASHKRIN  300
SNCSLLRVVP SDHKAAMVVA DQPEPSIETN MSLSTTSTSV SPEADAGAGV FFAKTTKKPI  360
KFVCPVCSKE FGSGQALGGH KRSHSIAGEL CERGHADGGI LRPEQPLLAE RFLDLNLPAP  420
GGDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174PRRRPRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G31080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379992e-57AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055832e-57AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149592e-57AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690583.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLJ3LPY20.0J3LPY2_ORYBR; Uncharacterized protein
STRINGOB03G31080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-22C2H2-like zinc finger protein