PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G29100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 132aa MW: 15261.5 Da PI: 10.5589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv +v+q+G g+W++ +++ g++R+ k+c++rw +yl OB03G29100.1 16 KGPWTREEDEKLVAYVEQHGHGSWRSLPKRAGLNRCCKSCRLRWINYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++ ++ lG++ W+tIa +++ gRt++++k++w++ OB03G29100.1 69 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 112 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.483 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-33 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.36E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.742 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.88E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VEQHGHGSWR SLPKRAGLNR CCKSCRLRWI 60 NYLRPDIKRG NFTPEEEQAI ITLHSVLGNK WSTIATRLPG RTDNEIKNYW NTRLKKRLIG 120 AGIDPATHRA RP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G29100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243428 | 1e-160 | AK243428.1 Oryza sativa Japonica Group cDNA, clone: J100067L15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631094.1 | 8e-92 | transcription factor MYB93 | ||||
Refseq | XP_015689920.1 | 6e-93 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9SBF3 | 5e-69 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A0E0NVZ7 | 2e-90 | A0A0E0NVZ7_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PBW4 | 2e-90 | I1PBW4_ORYGL; Uncharacterized protein | ||||
TrEMBL | J3LPD4 | 6e-93 | J3LPD4_ORYBR; Uncharacterized protein | ||||
TrEMBL | Q75LP7 | 2e-90 | Q75LP7_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G20530.1 | 3e-91 | (Oryza rufipogon) | ||||
STRING | OS03T0388600-01 | 3e-91 | (Oryza sativa) | ||||
STRING | OB03G29100.1 | 1e-93 | (Oryza brachyantha) | ||||
STRING | ORGLA03G0186000.1 | 3e-91 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18018 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-73 | myb domain protein 9 |
Publications ? help Back to Top | |||
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