PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G29080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 986aa    MW: 110042 Da    PI: 6.2044
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G29080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.25.1e-56221373118
          CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                   + +krwl+++ei++iL n+++++l+ e+++rp+sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr+y
  OB03G29080.1  22 EAQKRWLRPTEICEILSNYRSFSLSPEPPNRPESGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTY 118
                   459********************************************************************************************** PP

          CG-1 100 wlLeeelekivlvhylevk 118
                   wlLee++++ivlvhylevk
  OB03G29080.1 119 WLLEEDFTHIVLVHYLEVK 137
                   ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.67816142IPR005559CG-1 DNA-binding domain
SMARTSM010765.0E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4922136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.7E-8420506IPR013783Immunoglobulin-like fold
CDDcd001020.00817420506No hitNo description
PfamPF018332.1E-8421504IPR002909IPT domain
SuperFamilySSF812964.37E-18421505IPR014756Immunoglobulin E-set
SuperFamilySSF484038.71E-17597712IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-18611713IPR020683Ankyrin repeat-containing domain
CDDcd002045.48E-14612710No hitNo description
PROSITE profilePS5029719.306618712IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.79618650IPR002110Ankyrin repeat
PfamPF127964.3E-8623713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.618651683IPR002110Ankyrin repeat
SMARTSM002480.11651680IPR002110Ankyrin repeat
SMARTSM00248500690719IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8820876IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045825847IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791826855IPR000048IQ motif, EF-hand binding site
PfamPF006120.0053827846IPR000048IQ motif, EF-hand binding site
SMARTSM000150.011848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267849873IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-4851870IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MAEARMFPRP NQPPDISQMV LEAQKRWLRP TEICEILSNY RSFSLSPEPP NRPESGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGSK QISRAKEEIM QLSGADSPSC SNSITSQNQM TPQIMDAAES  180
PISGQISEYE GAEPDNCRAS SRNHPFIEMQ QPMDGIVMDD ILYPSASAIC NQGYHGDLLP  240
GTSNLNSHSF THSDIARMFD EPFSGYANGF TEPTLHSSFS MIEANNLEDS SLLETFTSEA  300
LYTNNLSQKE ADALSFAGIQ SSQVNGNKYT EGSTKHSLLK QLSVDLFKIE STGLKKHDSF  360
SRWMSKELGE VVDLDIKSSS DAFWSSSEIV NAADGPSAPT NGQLDAYVVS PSLAQDQLFS  420
ILDISPNCSY IGSKTKVLVT GTFLAENVEN CKWSCMFGDV EVPAEVLADG ALRCYAPEHQ  480
SGRVPFYVTC SNRIACSEVR EFEYRDSDAQ YTEASASHSQ ANVINEMHLQ IRLEKLLSLG  540
PNDNQLLVCG NEKHELINAI NSLMLDEKWS DQESPSGLTD DLTTTNQSLK KLVKEKLHCW  600
LICKISNSEK GPNVLGKEGQ GVIHLAAALG YDWAIRPILV SGVNINFRDA HGWTALHWAA  660
SCGRERTIGV LIANGAAAGA LTDPTSEFPS GRTPADLAST NGHKGIAGFL AESALTSHLS  720
ALSIKDSKDS SVGEACGLTI AEDFPQTSYA QLAVEDSHAD PLKDSLSAVR KSTQAAARIF  780
QAFRVESFHR KKVVEYGDED CGLSDEHTLS LISLGNAKQG QHDTHLHSAA VRIQNKFRGW  840
KGRKEFMIIR QRIVKLQAHV RGHQVRRNYK KVVWSVGIVE KVILRWRRKR PGLRAFRLEK  900
QLESQSQIQP AKTEDEYDFL QDGRRQAEAR LQRALERVRS MTQYPEAREQ YHRLTTCVAE  960
MQQSRVMQDE MLSEAAGADG SDFMLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G29080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703500.0AK070350.1 Oryza sativa Japonica Group cDNA clone:J023052K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650150.20.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLJ3LPD20.0J3LPD2_ORYBR; Uncharacterized protein
STRINGOB03G29080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1