PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G28050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18954.5 Da PI: 9.06 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 38 | 90 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +WT+eEd l+++v + G ++W+++ar m+ +R++ qc++rw+++l OB03G28050.1 38 AWTPEEDACLARLVGENGFRHWRRVARDMPptaggrpRHRSPRQCRDRWRDHL 90 8*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.04 | 31 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 35 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 38 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.64E-11 | 38 | 90 | No hit | No description |
Pfam | PF00249 | 4.2E-14 | 38 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-17 | 38 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.739 | 91 | 144 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEETAEAFPS SAERETSTAS TPGRERLVLR IMIPLSPAWT PEEDACLARL VGENGFRHWR 60 RVARDMPPTA GGRPRHRSPR QCRDRWRDHL ARDVYRRPFT ADDDAELARL LLARDDGERS 120 WKDISRAARR GSEIILLLRW RELCGSDAFL RKLWCPLPPV QPSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G28050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213125 | 3e-88 | AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 1e-44 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | J3LP29 | 1e-112 | J3LP29_ORYBR; Uncharacterized protein | ||||
STRING | OB03G28050.1 | 1e-113 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 2e-07 | myb domain protein 118 |