PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G27910.1 | ||||||||
Common Name | LOC102721059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 294aa MW: 32505.6 Da PI: 8.3376 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.9 | 5e-36 | 28 | 120 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d++ ++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll+ki+ OB03G27910.1 28 FLSKTYELVDDPSSDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLSKIH 115 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ OB03G27910.1 116 RRKSS 120 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.8E-35 | 24 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.7E-59 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.9E-38 | 25 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-31 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAFLVERCGG GEMVVSSDGR GAAAPAPFLS KTYELVDDPS SDHVVSWGED GATFVVWRPP 60 EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFRKGAKHL LSKIHRRKSS 120 SSCSHPPPLL PLPMHQHYPL SLFSPPPPTT TTTTRSPPVG AAAAAYHFQE EYCSPSSDVV 180 VSGGDLLAAR SGDNRQLRRR NSLLLSELAH MRKLYDDIIY FLQNHVEPAA PSTPKPPPAP 240 SCRLVELGPS PSPTQRSGDD DAAVRLFGVR LDDHGKKRRA QLVEEGDVAS REAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 19 | 117 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 19 | 117 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 19 | 117 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G27910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125784 | 1e-122 | AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-122 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-122 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690975.1 | 0.0 | PREDICTED: heat stress transcription factor B-4d-like isoform X2 | ||||
Refseq | XP_015690976.1 | 0.0 | PREDICTED: heat stress transcription factor B-4d-like isoform X2 | ||||
Swissprot | Q10KX8 | 1e-128 | HFB4D_ORYSJ; Heat stress transcription factor B-4d | ||||
TrEMBL | J3LP15 | 0.0 | J3LP15_ORYBR; Uncharacterized protein | ||||
STRING | OB03G27910.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 8e-56 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Entrez Gene | 102721059 |