PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25800.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 419aa    MW: 46367.6 Da    PI: 6.3247
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.61.6e-34204258155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r+rWtpeLHe+Fv+av++LGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  OB03G25800.1 204 KQRMRWTPELHECFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 258
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.041201261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-32202260IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18202258IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-26204258IPR006447Myb domain, plants
PfamPF002493.8E-10206257IPR001005SANT/Myb domain
PfamPF143791.6E-25287334IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSSSLPTLPK FMKDITRPRN TQNILMPAQL PNDSMALHPR ASVVRSPYLP MLGYDCNPID  60
PVSSHERQFM AAPFISQSSN VEVFQSLCNN NTHGGHTEAT WFPAVSDAPD YMDTITIPDN  120
HTQSGTSTIT SDVAKQNEWW ADIMDDDWKD ILDATATDSQ SKSMAQASNS AASHPTFNQS  180
TSSHSGDICP VASPPNNSNA SSSKQRMRWT PELHECFVHA VNKLGGSEKA TPKGVLKLMK  240
VDGLTIYHVK SHLQKYRTAR YKPDLSEGTA QEGKTTEELS LDLKTSMDLT EALRLQMEVQ  300
KRLHEQLEIQ RKLQLRIEEQ GKYLQKMFEK QCKSSTQKVQ DPSSGDAATP SEPSNSVDKD  360
SNAALPNRIG DNHPGLAEFG KFSTNVGANQ KTQETDFPDS LATATDGSEL SQEKRRRVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-30204262260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413417KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634860.0AK063486.1 Oryza sativa Japonica Group cDNA clone:001-116-C05, full insert sequence.
GenBankAK1095100.0AK109510.1 Oryza sativa Japonica Group cDNA clone:002-104-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632603.10.0protein PHOSPHATE STARVATION RESPONSE 1
SwissprotB8ANX90.0PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLJ3LNF40.0J3LNF4_ORYBR; Uncharacterized protein
STRINGOB03G25800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.15e-65phosphate starvation response 1