PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25130.1
Common NameLOC102708599
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 333aa    MW: 37130 Da    PI: 8.9412
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-104878434
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34
                   k+ rr+++NReAAr+sR+RKka++++Le  
  OB03G25130.1 48 QKVLRRLAQNREAARKSRLRKKAYVQQLESS 78
                  5899************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-745108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0024791IPR004827Basic-leucine zipper domain
PfamPF001701.4E-74980IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.06E-75091No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-85192No hitNo description
PROSITE patternPS0003605267IPR004827Basic-leucine zipper domain
PfamPF141444.5E-33131206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADASSRTDT STVLDTEDKN QMLDGQSGGI MPSNSSDRSD RSDKPMDQKV LRRLAQNREA  60
ARKSRLRKKA YVQQLESSKL KLASLEQEIQ KARQQGIYIS SSGDQTHAMS GNGAMTFDLE  120
YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG  180
MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA  240
LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI  300
LTIRQAARAL LAIHDYFSRL RALSSLWLAR PRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25130.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422570.0AK242257.1 Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence.
GenBankAY6204140.0AY620414.1 Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP transcription factor mRNA, complete cds.
GenBankHM9911730.0HM991173.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649994.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_006649995.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLJ3LN870.0J3LN87_ORYBR; Uncharacterized protein
STRINGOB03G25130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-139TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]