PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G25040.1

Common Name

LOC102705890

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 328aa MW: 35922.8 Da PI: 4.6991

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G25040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	8.8e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar g++Rt+k+c++rw++yl OB03G25040.1 22 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 69 89********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ OB03G25040.1 75 RGNITPQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.281	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	5.86E-31	20	116	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-15	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-17	22	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-23	23	76	IPR009057	Homeodomain-like
CDD	cd00167	2.09E-12	24	69	No hit	No description
PROSITE profile	PS51294	23.581	70	124	IPR017930	Myb domain
SMART	SM00717	6.2E-15	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	75	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-23	77	123	IPR009057	Homeodomain-like
CDD	cd00167	1.03E-11	79	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDMAHERDAS SEEEVMAGDL RRGPWTVEED LLLVNYIAAH GEGRWNSLAR SAGLKRTGKS 60 CRLRWLNYLR PDLRRGNITP QEQLLILELH SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV 120 QKHAKQLKCD VNSQQFKDVM RYLWMPRLVE RIQAAASSSG GEAGNQQQQG GADTSPLSWQ 180 HGGCDDGLYE SAELPMPDAS CWPAEYCTAA GGQMHGTPAP ELSSTTAGSS SPSTDSGAGA 240 QPSWAQADGA EWFTTACDAS SAIGVATSDM KLAQPACQAV QTWTPESSLP GLSFPDLAVA 300 DFEIGGFDVD SFWTSMEDDL WCPTQAAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-24	13	122	18	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269\|PubMed:22301384}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G25040.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269\|PubMed:22301384}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120551	0.0	AK120551.1 Oryza sativa Japonica Group cDNA clone:J013130B13, full insert sequence.
GenBank	CT830663	0.0	CT830663.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H09, full insert sequence.
GenBank	CT834128	0.0	CT834128.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128J02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649985.1	0.0	PREDICTED: transcription factor WER-like
Swissprot	Q10MB4	0.0	MYB2_ORYSJ; Transcription factor MYB2
TrEMBL	J3LN78	0.0	J3LN78_ORYBR; Uncharacterized protein
STRING	OB03G25040.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	1e-83	myb domain protein 112

Link Out ? help Back to Top
Entrez Gene	102705890

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang A,Dai X,Zhang WH A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. J. Exp. Bot., 2012. 63(7): p. 2541-56 [PMID:22301384] Chen X, et al. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant Cell Physiol., 2014. 55(3): p. 604-19 [PMID:24399239] Lv Y, et al. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant Cell Environ., 2016. 39(3): p. 556-70 [PMID:26381647] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]