PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G24180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 308aa    MW: 33708.6 Da    PI: 6.8415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G24180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.13e-13239262226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   ktelC+ + r G C+yG+rC+FaHg
  OB03G24180.1 239 KTELCNKWER-GACPYGERCRFAHG 262
                   8*********.*************9 PP
2zf-CCCH19.12.3e-06275301127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ykt +C+ fa+   C+yG rC+F H+p
  OB03G24180.1 275 YKTLPCQMFAAASGCPYGHRCHFRHSP 301
                   9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-16231269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9237268IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-8237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427237264IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10239262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-10270300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7271300IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746274302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGELSFLSP ASSSCFSGGD FSSPPRAFPL EKLFVSAPSC VSEGRRVGNA GVLSSLPWVS  60
PQENPLESPS SCVSDGRSGC YNSALGASAE RQREVHEAER LLRSIAERYD DCFLRLRDAT  120
AEIADLRRER LRLGAENLHL SLLLEDLETE QRKQASAVAS PKQAEEEAAQ AGAPKSISIR  180
SPGYLSLKQS QGQSKPQRLR VRASQATEDA AARDEKEEDD NGDGGGEVEV QAYRQGAAKT  240
ELCNKWERGA CPYGERCRFA HGLQELRPVI RHPRYKTLPC QMFAAASGCP YGHRCHFRHS  300
PLPAAVSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-18239300567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G24180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-154AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-154AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149591e-154AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-154CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689864.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-130C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLJ3LMZ20.0J3LMZ2_ORYBR; Uncharacterized protein
STRINGOB03G24180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-36C3H family protein