PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G23760.1
Common NameLOC102712972
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 308aa    MW: 32576.5 Da    PI: 5.6079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G23760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +   +G+g+W++++++ g++R++k+c++r+ +yl
     OB03G23760.1 14 KGPWTAEEDAKLLAYTSTHGTGNWTSVPQRAGLKRCGKSCRLRYTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.55.4e-1769110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++
     OB03G23760.1  69 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 110
                      89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-24565IPR009057Homeodomain-like
PROSITE profilePS5129416.937961IPR017930Myb domain
SuperFamilySSF466892.93E-3011108IPR009057Homeodomain-like
SMARTSM007174.2E-141363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001674.00E-111661No hitNo description
PROSITE profilePS5129425.00362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2366116IPR009057Homeodomain-like
SMARTSM007173.5E-1566114IPR001005SANT/Myb domain
CDDcd001671.35E-1269112No hitNo description
PfamPF002493.5E-1569110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS THGTGNWTSV PQRAGLKRCG KSCRLRYTNY  60
LRPNLKHENF TQEEEELIVT LHAMLGSRWS LIANQLPGRT DNDVKNYWNT KLSKKLRQRG  120
IDPITHRPIA DLMQSIGTLA IRPPPTAGVA SYVPASQAAP PAFTAYHDAP YFAALPQQQV  180
VTKVEADAPV SPEQKPHQLN WSDFLADDAT GAALAGHADA PQAALGQYQE GPAAAATGIV  240
GGRAFGDVDG ASGAVDDGAG AASAFIDAIL DCDKEMGVDQ LIAEMLADPA YYGGGGGGSS  300
SSELGWGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G23760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727360.0AK372736.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649927.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLJ3LMV00.0J3LMV0_ORYBR; Uncharacterized protein
STRINGOB03G23760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-67myb domain protein 103