PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G21220.1

Common Name

LOC102713884

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 705aa MW: 78442.3 Da PI: 6.7899

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G21220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.6e-27	70	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ ++HnH OB03G21220.1 70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKNHNHG 160 6*****************************************999998899999********************************5 PP
2	FAR1	87.1	2.6e-27	206	299	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l OB03G21220.1 206 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdeGKTSKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLL 299 9***************************************999999998888999********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-24	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.4E-25	206	299	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MEGVVTSTVS EPKQDNEQRD SSAEFPRALT DMETSAMHDP EAQNLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKLHAG EHDSDLKENP 180 HSIEAVPIDE PVEGMEFESE EAAKLFYINY ARVNGFRARI SRYCRSRRDN SIISRQIVCS 240 KEGFREVRAR KDITDEGKTS KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS 300 SRAVPITSTS GKVVDIAATS TDPNEVKVEG YKVGVQCNST DSLTVLYNHL CQEAIKFAKE 360 GSVTEEIYHV AMNALKEAAK KVSEVKRSHP LMSQGGYAIN KSKHEVMRTE IVSALQCSNE 420 DNQKKMTPQL ELFQEPSSSL VLIPTNSLTH SSSNCADNIP LSCDLTIKAG EVRHVSESSY 480 LAKDSSQKSQ NSTCNQAFQG KDGKFHGPEE TAVAIPAIPL TLYMPIMKNP PRDSADGPYR 540 LLTAPIEAVP ISYRPAEPIQ HPQRSFSNLR TLPGFLPKSN KRGKGPNSLV HATALACGAR 600 VVPPMEAASL IKVIESKIRS GGATIAILPS SSLTPLIPEV ASMSSSSEDD EENDHSEPLM 660 ESIEHNCHDQ SSEEMKLQAD PSELETETEN CSAQPENEND DPTRF

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MEGVVTSTVS EPKQDNEQRD SSAEFPRALT DMETSAMHDP EAQNLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKNHNHG PVPPRKLHAG EHDSDLKENP  180
HSIEAVPIDE PVEGMEFESE EAAKLFYINY ARVNGFRARI SRYCRSRRDN SIISRQIVCS  240
KEGFREVRAR KDITDEGKTS KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS  300
SRAVPITSTS GKVVDIAATS TDPNEVKVEG YKVGVQCNST DSLTVLYNHL CQEAIKFAKE  360
GSVTEEIYHV AMNALKEAAK KVSEVKRSHP LMSQGGYAIN KSKHEVMRTE IVSALQCSNE  420
DNQKKMTPQL ELFQEPSSSL VLIPTNSLTH SSSNCADNIP LSCDLTIKAG EVRHVSESSY  480
LAKDSSQKSQ NSTCNQAFQG KDGKFHGPEE TAVAIPAIPL TLYMPIMKNP PRDSADGPYR  540
LLTAPIEAVP ISYRPAEPIQ HPQRSFSNLR TLPGFLPKSN KRGKGPNSLV HATALACGAR  600
VVPPMEAASL IKVIESKIRS GGATIAILPS SSLTPLIPEV ASMSSSSEDD EENDHSEPLM  660
ESIEHNCHDQ SSEEMKLQAD PSELETETEN CSAQPENEND DPTRF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G21220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134234	0.0	AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBank	AC210449	0.0	AC210449.2 Oryza glaberrima clone OG_BBa0012I13, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649764.1	0.0	PREDICTED: uncharacterized protein LOC102713884
TrEMBL	J3LM46	0.0	J3LM46_ORYBR; Uncharacterized protein
STRING	OB03G21220.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-30	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	102713884