PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G21170.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1058aa MW: 120515 Da PI: 6.6223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G21170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.9	6.8e-18	176	282	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkek.dgkwev 78 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ + +ek+ r+ a ++tgCka+l ++ ++ ++kw+v OB03G21170.1 176 LYKAYAYHTGFHAVRRTCHNY--EGLRYRSTFTCTHGGKSRAGASPsdgsgaryplrsskraaasQEKRARRGAAEKTGCKAMLIIRDKRaEDKWKV 270 7*********999998887..7888********9998877899**********98888888999*********9999** PP FAR1 79 tkleleHnHela 90 + +eleHnH+++ OB03G21170.1 271 EFVELEHNHPCT 282 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-16	176	282	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.5E-23	408	502	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.409	690	726	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0029	701	728	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence Send to blast
MTEENGQGVQ YCYSGPNSAT RFRRLPQASL SGMVVSLSLF KLQITQIVIC EYICMFCNLQ 60 HIGYQYDYYT ETFLKSIKAF FKFIVVCFPI LAAAARRVKR EVADDLNGEP ADDVDEDEEV 120 VVEEEEDDEV VVASDEEGDA DGGGEPVEAF EPRTLEEALV PRVGAVFDSV DEAFSLYKAY 180 AYHTGFHAVR RTCHNYEGLR YRSTFTCTHG GKSRAGASPS DGSGARYPLR SSKRAAASQE 240 KRARRGAAEK TGCKAMLIIR DKRAEDKWKV EFVELEHNHP CTPDMVRFLK AYREMPDSAK 300 KKAKISDEMD DMVEKSLSEI AETRKFPTRP KRSVGGASVG GFRFSRSDSF VQRFGEDDLI 360 ALKKFIETMQ RKKPNFMHYW DLDHETHVKN FFWTDSRSQA QYRYFGDVIT LDVMYLQHSR 420 VSFPLATLLG VNNHGHLVLL GCGLLSSDSK ENYVWLLKRW LSCMSGKPPE AITTTYSDAV 480 ALAVAEVLPN ARHRFCFWHI LKKLQENVGR THEKEAISSR FKEVVYDTVT LTDFEREWGS 540 MVEQYKLKDN EWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD GVVTTKTTLP 600 VFLEQYETTL RGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LMELYTVPMF QAFQDEIKQL 660 MHVICKEVDR SGNSITYMAS ELVQGKKVDY TVVYNSADKD VWCICRSFPS RGILCSHALS 720 VLKQENVLML PSKYILNRWR KDFRILHASA SSSSVSSNRD LSVFNDLYAC GHEYLEDVID 780 IGAREPELKE FVLSVMKEAK DKLIRPDHVQ QDDQQVDVNM SVTGQVSADR RVDVNMSSNS 840 TALIQGDRRV DTNVTSNTTA LVHGHGDAIT SNTTAMIHGD RRVEMKIPTP HLIHGEGRVD 900 MNMASPHLMQ RDRRVDMNMA SPHLIQGDRR VDMNLASPHF IQSDRRIDMN LTSSHLIQGD 960 RRVDMNMSSP HLIQGDTRVD MNMVSTAQNG LHSFDLVNVN LESGPLPMVA TDFMQMHQHP 1020 PVYHPKQLLN MRDQVMDTNK RPNMETNTYF MGGGMHVG

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence Send to blast

MTEENGQGVQ YCYSGPNSAT RFRRLPQASL SGMVVSLSLF KLQITQIVIC EYICMFCNLQ  60
HIGYQYDYYT ETFLKSIKAF FKFIVVCFPI LAAAARRVKR EVADDLNGEP ADDVDEDEEV  120
VVEEEEDDEV VVASDEEGDA DGGGEPVEAF EPRTLEEALV PRVGAVFDSV DEAFSLYKAY  180
AYHTGFHAVR RTCHNYEGLR YRSTFTCTHG GKSRAGASPS DGSGARYPLR SSKRAAASQE  240
KRARRGAAEK TGCKAMLIIR DKRAEDKWKV EFVELEHNHP CTPDMVRFLK AYREMPDSAK  300
KKAKISDEMD DMVEKSLSEI AETRKFPTRP KRSVGGASVG GFRFSRSDSF VQRFGEDDLI  360
ALKKFIETMQ RKKPNFMHYW DLDHETHVKN FFWTDSRSQA QYRYFGDVIT LDVMYLQHSR  420
VSFPLATLLG VNNHGHLVLL GCGLLSSDSK ENYVWLLKRW LSCMSGKPPE AITTTYSDAV  480
ALAVAEVLPN ARHRFCFWHI LKKLQENVGR THEKEAISSR FKEVVYDTVT LTDFEREWGS  540
MVEQYKLKDN EWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD GVVTTKTTLP  600
VFLEQYETTL RGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LMELYTVPMF QAFQDEIKQL  660
MHVICKEVDR SGNSITYMAS ELVQGKKVDY TVVYNSADKD VWCICRSFPS RGILCSHALS  720
VLKQENVLML PSKYILNRWR KDFRILHASA SSSSVSSNRD LSVFNDLYAC GHEYLEDVID  780
IGAREPELKE FVLSVMKEAK DKLIRPDHVQ QDDQQVDVNM SVTGQVSADR RVDVNMSSNS  840
TALIQGDRRV DTNVTSNTTA LVHGHGDAIT SNTTAMIHGD RRVEMKIPTP HLIHGEGRVD  900
MNMASPHLMQ RDRRVDMNMA SPHLIQGDRR VDMNLASPHF IQSDRRIDMN LTSSHLIQGD  960
RRVDMNMSSP HLIQGDTRVD MNMVSTAQNG LHSFDLVNVN LESGPLPMVA TDFMQMHQHP  1020
PVYHPKQLLN MRDQVMDTNK RPNMETNTYF MGGGMHVG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G21170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632258.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	J3LM41	0.0	J3LM41_ORYBR; Uncharacterized protein
STRING	OB03G21170.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-82	FAR1-related sequence 5