PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G19620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 640aa MW: 68465.3 Da PI: 6.8433 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 6.1e-16 | 284 | 343 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g ++ ++++lg ++t+++Aa+a++ a++k++g OB03G19620.1 284 SQYRGVTRHRWTGRYEAHLWDnSCRkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 343 78*******************766577788446**********99*************97 PP | |||||||
2 | AP2 | 46.4 | 9.6e-15 | 386 | 437 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OB03G19620.1 386 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 437 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.18E-21 | 284 | 351 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 284 | 343 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-16 | 284 | 353 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.506 | 285 | 351 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-27 | 285 | 357 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 285 | 352 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 286 | 297 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.28E-24 | 386 | 447 | No hit | No description |
Pfam | PF00847 | 3.2E-10 | 386 | 437 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 386 | 446 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.151 | 387 | 445 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-34 | 387 | 451 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 387 | 445 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 427 | 447 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MDSGGSNWLG FSLSPHMPMK VPSSSGPATA HHHPPPDAAD AMSSSPPNSA TTTCNFLFSP 60 PAQMVAASPG YYYVGGAYGD GTSTAGVYYS HLPVMPIKSD GSLCIVEGMM PSASPKLEDF 120 LGCGNGTAHD PATYYSHQQG QEEDASRAAY QHHQLVPYNI QPLTEAEMLQ EAAAPMEDAM 180 AAAKNFLVTS YGACYGGSQE MQPLSLSMSP GSQSSSCISA APPQHQQMAV VAAASPVAAA 240 AGGQGSNSND GGELRVGKKR GTGKGGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA 300 HLWDNSCRKD GQTRKGRQVY LGGYDTEDKA ARAYDLAALK YWGLSTHINF PLENYRDEIE 360 EMERMTRQEY VAHLRRRSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST 420 QEEAAEAYDV AAIKFRGLNA VTNFDITRYD VDKIMESSSL LPGEAARKVK AIEAATDHVP 480 VTQPSIGREL CATTEEASAA ATAGTDWRMV LHGSQQQAEA CAEAPTTDLQ KGFMSDAHSA 540 LHGIVGFDVE SAAHEIDVSG GKISGINFSN SSSLVTSLSN SREGSPERLG LAMLYSKHPS 600 AVSLATMSPW MPMPAPAAAH GMRPPGAIAH LPVFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G19620.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106306 | 0.0 | AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690535.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-142 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-142 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | J3LLN6 | 0.0 | J3LLN6_ORYBR; Uncharacterized protein | ||||
STRING | OB03G19620.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-112 | AP2 family protein |