PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 351aa    MW: 40005.7 Da    PI: 4.6192
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.52e-281859103
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   +++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll++ikr+k++
  OB03G19170.1   1 MVSDPATDKVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLKTIKRRKKS 85 
                   899***************************.8**************************999.........**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-28182IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-26182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-24182IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004152.7E-38182IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-63143IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403256IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-64456IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVSDPATDKV ISWAEGGGSF VIWDSHAFER DLHRHFKHSN FTSFIRQLNT YGFRKVHPDR  60
WEWANEGFIM GQKHLLKTIK RRKKSSQEAP SEIQKATVKT APGTENIEIG KYGGLEKEVE  120
TLKRDKALLM QQLVDLRHYQ QTSNLEVQNL IERLQVMEQN QQQMMALLAI VVQNPSFLNQ  180
LVQQQQQQRR TSWWNPDGSK KRRFHALEQG PVTDQETSGR GAQIIEYLPT VPETSGQVTP  240
MEGAICSQPV PSPAVATPMD MQTTSNIGDT LGSSEEPFTD NSTLHEWDDS EMQLLFDDNL  300
DPILPPFEND GQVEAPLSIQ DYDFPQLEQD CLMEAQYNCN NPQYADVITE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-1618527123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725710.0AK072571.1 Oryza sativa Japonica Group cDNA clone:J023131M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690243.10.0PREDICTED: heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLJ3LLJ10.0J3LLJ1_ORYBR; Uncharacterized protein
STRINGOB03G19170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.25e-66heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]