PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G19030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 887aa    MW: 99614.6 Da    PI: 4.9867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.63.7e-17691981128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                   lp+G++F+P+d +l+  +L++++ + +      +   e+ik+vd       ++P+d+p  ++++    yfF+k+ k  ++g+ +    +   W++ g
  OB03G19030.1  69 LPRGVEFNPSDGDLL-WHLAAEIGNGQarrhpfI--GEFIKSVDetigFGCTHPQDIP-GIRKDGCAAYFFHKNFKVCNNGNDSYI--N---WQKVG 156
                   699************.789999988886665431..2235555433338899******.666777799********9988766555..3...***** PP

           NAM  88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   +  +++  ++ l g+k+++++y  k + +++++tdW++h+y++
  OB03G19030.1 157 NPIPIIL-DEDLQGCKEVFMLYtyKTDGNSPQSTDWILHQYHV 198
                   *******.999**********97667788889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-2562216IPR003441NAC domain
PROSITE profilePS5100520.80369216IPR003441NAC domain
PfamPF023652.9E-670198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAEEVFPAQP PSGLSDAEDL PLAERRRRLL RPPVDSKPPA LERREARPKA SAAEAEGAGE  60
AAQQGWLGLP RGVEFNPSDG DLLWHLAAEI GNGQARRHPF IGEFIKSVDE TIGFGCTHPQ  120
DIPGIRKDGC AAYFFHKNFK VCNNGNDSYI NWQKVGNPIP IILDEDLQGC KEVFMLYTYK  180
TDGNSPQSTD WILHQYHVTS TEKDEGELVV SKIFYKSEES QFEWADKAHS QSAQATSTIN  240
DDSREDLQLE NHSSNVVTGS SFAQGNENKQ KEMQTETCPD ENKLKFSNVL DNMHIENKID  300
DHDEIEELDH MSLQERYRIL RAERHSCSTV VSYEQCAIDG LENSCRLETN GLIPKRNYVG  360
TAFRDGMHSM LQEISSAPPI IDSTSNDNNR RLLAEGLSNS HQSHEAGCDS GFLSMPCFVA  420
PSQCQVGCSH DLSVNGNTLI HSDDPSLSLT PTIGDERIQL KGINDRTCLA DIKLEPALEG  480
FGDLAEKITS SMHSTDPKHV TEGSSLVGSI NYVSSEISKR ISEVARSKSE SSHVEGLLPF  540
LGIKSEVIRS ELPPIVCGLT PINITEFTAK KNITLNHDGG LAYCSSKRKR RKTGRDPSEK  600
TPEEDSHRSD EGTAYFSRRR RRRKTATDSI EKALEEDAPG LLQILLDRGI VVSEIKLYGV  660
EEDDDMVPDC TESDFLDLEN VITKLFPQRT SLLKSAVRHE KGERALYCLS CLISLIEQSR  720
YLQFRDCPVE WGWCRDLQSF VFIFKSHNRI VLEWPEYGYA TYFFEIVKSL PIEWQIQRLV  780
TAMKLSGCGR TALIENRPLL IGEDLTEGEA RVLEEYGWLP NSGLGTMLNY RDRVVHDRWN  840
EKSVTDWRAK IGKLLMSGYS EGHLVLSHFP TKVGQLEDID VKQEDPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1586591KRKRRK
2617622RRRRRR
3617623RRRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G19030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690965.10.0PREDICTED: uncharacterized protein LOC102706926
TrEMBLJ3LLH70.0J3LLH7_ORYBR; Uncharacterized protein
STRINGOB03G19030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.15e-37NAC domain containing protein 85