PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G18700.1
Common NameLOC102700035
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 196aa    MW: 21908.2 Da    PI: 8.7234
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G18700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY51.34.9e-16148146
         YABBY  1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsll 46
                  +d++s se++Cyv+C++Cnt+la  v vP + l+ +vtv+CGhC +l 
  OB03G18700.1  1 MDLVSPSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLS 48
                  578999***************9744778****************9984 PP
2YABBY93.36e-298214797162
         YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                   +   +s  ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  OB03G18700.1  82 PLPLVSPTSNEASPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147
                   444557888999****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.3E-436148IPR006780YABBY protein
SuperFamilySSF470951.96E-892149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-5102149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDLVSPSEHL CYVRCTYCNT VLALQVGVPC KRLMDTVTVK CGHCNNLSFL SPRPPMVQPL  60
SPTDHPLGPF QGPCTDCRRN QPLPLVSPTS NEASPRAPFV VKPPEKKHRL PSAYNRFMRE  120
EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSSTVSTSN SNPEPRVVSA PVPHQERATE  180
QVVESFDIFK QMERSG
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G18700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1065530.0AB106553.1 Oryza sativa Japonica Group DROOPING LEAF mRNA for DL protein, complete cds.
GenBankAY4947130.0AY494713.1 Oryza sativa (japonica cultivar-group) drooping leaf (DL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690407.11e-143PREDICTED: protein DROOPING LEAF isoform X1
SwissprotQ76EJ01e-131YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLJ3LLE41e-142J3LLE4_ORYBR; Uncharacterized protein
STRINGOB03G18700.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-52YABBY family protein