PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G17340.1

Common Name

LOC102703759

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 541aa MW: 56492.7 Da PI: 8.7203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G17340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OB03G17340.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	13.2	0.00027	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ OB03G17340.1 139 WKCDKCSKKYAVQSDWKAHTKTC 161 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.74E-7	62	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	63	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-5	127	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.74E-7	134	159	No hit	No description
SMART	SM00355	140	139	159	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MEVETSSGTN ERGVSSSGGA QQQQQPPPQP PPAKKKRALP GMPDPNAEVI ALSPKTLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSGKEVR KRVYVCPEPS CVHHDPSRAL 120 GDLTGIKKHF RRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AEESAKARAA PPPADDDGTS ASGGPPPQAL LPPPTQAPPP PTTTAAPAPA 240 AQPEERDREA APDQFATPAP VPAPVPPPPL PPVAAPNECA SSSSSGVAPT SQSLLSSMFA 300 PPSVAQAPQY VDPVGVGGGG HQERGVPAKP PALCLASNAS SSLFSPPVTA DRQQFAPPPP 360 PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS PAPASSSGQL HHQQETMQVP 420 IPASSLPEWP PRLQPEPSPM LSSGLGLGLP YDATGGPVSL PELMMGQSSL FSAKPATLDF 480 LGLGVSPTGA STSRGFPAFI QPIGGAVSLA GSATGTAETF VGAHGGQGNP WERNPSSSPI 540 L

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MEVETSSGTN ERGVSSSGGA QQQQQPPPQP PPAKKKRALP GMPDPNAEVI ALSPKTLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSGKEVR KRVYVCPEPS CVHHDPSRAL  120
GDLTGIKKHF RRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEESAKARAA PPPADDDGTS ASGGPPPQAL LPPPTQAPPP PTTTAAPAPA  240
AQPEERDREA APDQFATPAP VPAPVPPPPL PPVAAPNECA SSSSSGVAPT SQSLLSSMFA  300
PPSVAQAPQY VDPVGVGGGG HQERGVPAKP PALCLASNAS SSLFSPPVTA DRQQFAPPPP  360
PSPSPHMSAT ALLQKAAQMG ATSSSSSFLR CLGLDMSSSS PAPASSSGQL HHQQETMQVP  420
IPASSLPEWP PRLQPEPSPM LSSGLGLGLP YDATGGPVSL PELMMGQSSL FSAKPATLDF  480
LGLGVSPTGA STSRGFPAFI QPIGGAVSLA GSATGTAETF VGAHGGQGNP WERNPSSSPI  540
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	135	196	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-35	135	196	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G17340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649565.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-134	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	J3LL08	0.0	J3LL08_ORYBR; Uncharacterized protein
STRING	OB03G17340.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	9e-95	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Entrez Gene	102703759

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]