PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16740.1
Common NameLOC102719565
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1047aa    MW: 117094 Da    PI: 5.8715
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.53.5e-55191352117
          CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                   lke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fqrr
  OB03G16740.1  19 LKEaQHRWLRPTEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRR 115
                   45559******************************************************************************************** PP

          CG-1  98 cywlLeeelekivlvhylev 117
                   +yw+Lee++ +ivlvhyle 
  OB03G16740.1 116 SYWMLEEDYMHIVLVHYLEI 135
                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.19515141IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-5462547IPR013783Immunoglobulin-like fold
CDDcd001020.00764462549No hitNo description
PfamPF018331.1E-5463540IPR002909IPT domain
SuperFamilySSF812963.8E-15463548IPR014756Immunoglobulin E-set
SuperFamilySSF484031.34E-16654755IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.7E-18654761IPR020683Ankyrin repeat-containing domain
CDDcd002041.71E-13654752No hitNo description
PROSITE profilePS500888.79660692IPR002110Ankyrin repeat
PROSITE profilePS5029718.086660764IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013693722IPR002110Ankyrin repeat
PROSITE profilePS500888.843693725IPR002110Ankyrin repeat
SMARTSM002481400732761IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8864917IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.13866888IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187867896IPR000048IQ motif, EF-hand binding site
PfamPF006120.0073869887IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022889911IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56890914IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4892911IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQHRWLRPT EICEILKNYR NFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEIKAGKL SSRSTGHDDI LQTSHVDSPL SQLPSQTTEG ESSVSGQASE  180
YDETESDIYS GGARHHPFSR TQQHENGGGS VIDHSIFSSY APASSLGSYQ GLQATAPNTG  240
FYSHGQDTLP VVLKESDLGT AFNGPNSQFD LSLWTEAMKP DIGTHQMPLY QPLVPPEQSP  300
FTEGSGIESF TFDEVYSNGL SIKDVGGDDT DGETPWQIPN ASVSFAAVDN FQQNDKSLEE  360
AISYPLLKTH SSGLSDILKE AINYPLLKTQ SSGLSDILKD GFKKNDSFTR WMSKELSEVD  420
DSQITSSSGV YWNSEEADNI IEASSSDQFT LAPVLAQDQL FSIVEFSPIW THAGSKTRVF  480
IKGKFLSSDE VKRFNWSCMF GEDEVPAEII ADDTLGCYSP SHKPGRVPFY VTCSNRLACS  540
EVREFEFRPQ YMDAPSPHGS TNKTYLQMRL DKLLSLEQDE IQSTLSNPTK EIVDLSKKIS  600
LLMMNNDDWS ELLKLADDNE PAIDDKQDQF LQKCIKEKLH IWLLHKVGDG SKGPSVLDEE  660
GQGVLHLAAA LGYDWAIRPT ITAGVNINFR DAHGWTALHW AAFCGRERTV VALIALGAAP  720
GAVTDPTPNF PSGSTPADLA SANGHKGISG FLAESSLTSH LQTLNLKEAM RSSAVEISGL  780
PAIVNVANRS TSPLAVEGLH TGSMGDSLGA FRNAAQAAAR IYQVFRMQSF QRKQAVQYED  840
DNGAISDERA MSLLSAKPSK PAQLDPLHVA ATRIQNKFRG WKGRKEFLLI RQRIVKIQAH  900
VRGHQVRKHY RKIVWSVGIV EKIILRWRRR GAGLRGFRPT ENADSTSSSS VDATQNKPAE  960
NDYDFLQEGR KQTEERLQKA LARVKSMVQY PEARDQYQRI LTVVTKMQES QALQEKMLEE  1020
STEMDEGLLM SEFQELLDDD MPTPGYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649535.10.0PREDICTED: calmodulin-binding transcription activator 1-like
TrEMBLJ3LKU80.0J3LKU8_ORYBR; Uncharacterized protein
STRINGOB03G16740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains