PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16050.1
Common NameLOC102710476
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 693aa    MW: 79394.1 Da    PI: 8.4544
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.81.9e-101241235
          GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                  +Rrgp+g +tLCnaCG+ ++k ++
  OB03G16050.1  1 MRRGPEGRRTLCNACGIAWAKGKV 24
                  5********************986 PP
2FAR188.21.2e-2758143188
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                   +fYn+YA +vGFsvrks+s ks +n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++ +k ++dgk++++++  +HnH+
  OB03G16050.1  58 EFYNKYAGHVGFSVRKSSSDKSAENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMSIKITSDGKYRISEFLPDHNHQ 143
                   6*********************6665.99**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003203.8E-8124IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.6E-7124IPR013088Zinc finger, NHR/GATA-type
SMARTSM004010.0094139IPR000679Zinc finger, GATA-type
PfamPF031012.5E-2458143IPR004330FAR1 DNA binding domain
PfamPF105513.5E-23267363IPR018289MULE transposase domain
PROSITE profilePS509669.94537584IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-5537581IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MRRGPEGRRT LCNACGIAWA KGKVRKVIDS DTPMDNATFA QMVPELGMEF DDEDRAYEFY  60
NKYAGHVGFS VRKSSSDKSA ENITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR  120
MSIKITSDGK YRISEFLPDH NHQPAPPSTM HMLRSQRILT ELQTTEADSS EDSATLSRFS  180
SYSLVKQAEV IRGNIFLPAD YRCHLRSKRK KNMRAGDAGA AVKYLQSMQL NNPSFFYAVQ  240
LDEDDKLTNI FWADSKSRTD FSYYGDVICL DATYKINEHG RPLTLFLGVN HHKQICIFGA  300
TLLYDESEES FKWLFDTFKV ATNGKQPKTI LTDWSLAATI AAATTAAWPG TVHCLCPWQV  360
YQNSVKHLNH IFQGSKTFAR DFGKCVYDYE DEETFLLGWK SMVEKYDLRN NDWIKKLFDD  420
RDKWCPVYNR HIFTADIRSS LQSESVSSAL NKSLSPQFDL LSFFKHYERV LDEHRYAELQ  480
ADFHASQSFP RIPPSKMLKQ AANMYTPMVF EIFRREFEMF VDSMIYSCGE VGNAFKYRVA  540
VTDKPGEHYV RFDSAMLSAV CSCKKFEMMG IQCCHVLKVL DFRNIKELPQ KYFMRRWKKD  600
AKSASTGNQE FLNGVVSQTP SSLLNVPMPF IDSQHVQSSS QLNHDTSVSN FHQQALHGGA  660
EGSQGYVPLA GMQQQEQQPF IGSFRLNHET CFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678070.0AK067807.1 Oryza sativa Japonica Group cDNA clone:J013120L22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689692.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBLJ3LKM90.0J3LKM9_ORYBR; Uncharacterized protein
STRINGOB03G16050.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5