PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G15730.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 460aa    MW: 49934.5 Da    PI: 8.4453
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G15730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-15245304155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  OB03G15730.1 245 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 304
                   789******************544454478446*************************98 PP
2AP246.68.3e-15349398355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OB03G15730.1 349 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 398
                   9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-20245314No hitNo description
SuperFamilySSF541717.19E-17245314IPR016177DNA-binding domain
PfamPF008479.4E-12246304IPR001471AP2/ERF domain
PROSITE profilePS5103218.716246312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15246313IPR001471AP2/ERF domain
SMARTSM003801.5E-28246318IPR001471AP2/ERF domain
PRINTSPR003677.0E-6247258IPR001471AP2/ERF domain
CDDcd000186.61E-24347408No hitNo description
SuperFamilySSF541717.19E-18347408IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-18348406IPR001471AP2/ERF domain
PROSITE profilePS5103219.203348406IPR001471AP2/ERF domain
SMARTSM003802.9E-33348412IPR001471AP2/ERF domain
PfamPF008471.1E-9349398IPR001471AP2/ERF domain
PRINTSPR003677.0E-6388408IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGGGEGNNG GGDADGSCSS PVAASPLVAM PLHSDGSVQY  60
DAPDWRHAEA KDPKLEDFMS VSYSNNKSSD LYSSSHVDQL KYHHVHDVQA FSSPYFHGHG  120
GSGNVGGIDI NMNAPPACTV VLPDQRVPPP QDHHFLPHHH AQYFLGPQNP MPAPMYPPPA  180
GGGGGVVDGS MSISGIKSWL RQAMYVPDRS SALSLSVPAA APPSEPAPAM PVVRKPTQTF  240
GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV YLGGYDKEEK AARAYDLAAL  300
KYWGPTTHIN FPLSTYKKEL EDMKHMTRQE FIAHLRRNSS GFSRGASMYR GVTRHHQHGR  360
WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDISKY DVKRICSSTH  420
LIGGDLACRR SPTRVPDAPA PGASADRSDA QGDLSGGAAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G15730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851150.0AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689783.10.0PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
TrEMBLJ3LKJ70.0J3LKJ7_ORYBR; Uncharacterized protein
STRINGOB03G15730.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-118AP2 family protein