PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G15300.1
Common NameLOC102723038
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 431aa    MW: 46159.7 Da    PI: 8.3346
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G15300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-3995155262
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s
  OB03G15300.1  95 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSTS 155
                   7899*****************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3291152IPR003851Zinc finger, Dof-type
PfamPF027014.7E-3297153IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.76199153IPR003851Zinc finger, Dof-type
PROSITE patternPS013610101137IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGECRVGGGG GDGLIKLFGK TIPVPDAGDA DKETQYSGSS TTEPKIQEAI PQDSTSPPPQ  60
PEVVDTEDSS AAKNSSENQQ QQGDTANQKE KLKKPDKILP CPRCSSMDTK FCYYNNYNIN  120
QPRHFCKNCQ RYWTAGGAMR NVPVGAGRRK SKSTSAASHF LQRVRAALPG DPPLYSPVKT  180
NGTVLSFGSD LSTLDLTEQM KHLKDKFIPT TGIKNTDDLS VGSCAEGLAK TDDSNRMDLK  240
EKVSGDKSAS VAQHPCMNGG TMWPFGVAPP PAYYTSSIAI PFYPAAAAAA YWGCMVPGAS  300
NTPWPPQSQS QSASSSSAAS PVSTMTNCFK LGKHRRDGDE ELDSKGNGKV WVPKTIRMDD  360
VDNVARSSIW SIIGIKGDKV GTDHGRGCKL AKVFETKDEA KTATHTVISS LPFMQGNPSA  420
LSRSVTFQEG S
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G15300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735560.0AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBankAC1444910.0AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBankAK0609000.0AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBankAK0669120.0AK066912.1 Oryza sativa Japonica Group cDNA clone:J013089G12, full insert sequence.
GenBankAK1045230.0AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2244290.0AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690912.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLJ3LKF40.0J3LKF4_ORYBR; Uncharacterized protein
STRINGOB03G15300.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-62cycling DOF factor 2