PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G14700.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 887aa    MW: 101908 Da    PI: 7.7399
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G14700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.91.3e-275446542100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEESXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkhksF 86 
                   Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+Y     +++ + +++            +++ weF+++ F
  OB03G14700.1 544 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYVSLFPNSQCHFESNlfsfvlqgfrkiDPDRWEFANDGF 640
                   9**********************************************************7544444444434467888877765449********** PP

                   XXXXXXXXXXXXXX CS
  HSF_DNA-bind  87 kkgkkellekikrk 100
                    +g+++ll+ ikr+
  OB03G14700.1 641 LRGQRHLLKMIKRR 654
                   *************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.103.5E-91117288IPR014710RmlC-like jelly roll fold
HamapMF_0315437.673123286IPR0274961,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
SuperFamilySSF511823.24E-53124293IPR011051RmlC-like cupin domain
PfamPF030791.3E-63124278IPR004313Acireductone dioxygenase ARD family
Gene3DG3DSA:1.10.10.107.0E-33540654IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-47540654IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-30540654IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-11544567IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-26544654IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-11582594IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-11595607IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0051302Biological Processregulation of cell division
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005506Molecular Functioniron ion binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAGIHLMDRA TQRILPPLQL SSMASARIIH DRMRRDGLQE LRQRTSSTLP GYQESGGFQL  60
PNSGKATQGR RVRFRTWRTS SRVKLRFVES QIKLDRRLFD LLVDLYLRAC QSWELGDGKE  120
EVIQAWYMDD SEEDQRLPHH REPKEFIPLS KLSELGILSW RLNADDWEND ENLKKIREAR  180
GYSYMDICDV CPEKLPNYEA KLKNFFEEHL HTDEEIRYCL EGSGYFDVRD QNDQWIRVAV  240
KKGGMIVLPA GMYHRFTLDS ENYIKAMRLF VGEPVWTPYN RPHDHLPASS DPCDLETKKN  300
SDKLRKNSIG KEETFLFTRR QIYPAIVSAS RRPITERSNK FSDPQAKASS RRGVVMRFRS  360
EKEDGASCRR RLSIRPRPLA AVPANLSHTL RRPPPGLGPL EASDPAAATN PQPRRSRTFH  420
SSPGHLLCCL CLYRGVYIAR AMPLSTGERS TSLTCPLPTT TLADRRAGFI RFQEQFFDWG  480
RTRLGIVCWV WFADPPAMEP MLPGIVKEEW PPSSPPEEED EGEGDPSEAP RPMEGLHEVG  540
PPPFLTKTFD LVADPATDGV VSWGRAGNSF VVWDPHVFAA VLLPRFFKHN NFSSFVRQLN  600
TYVSLFPNSQ CHFESNLFSF VLQGFRKIDP DRWEFANDGF LRGQRHLLKM IKRRPLPYLP  660
ASQHALGTYL EVGQFGLDEE IDRLKRDKNI LLAEVVKLRH EQQSTKADMR AMEERLQHAE  720
QKQVQMMGFL ARAMQNPDFF HQLIQQQDKM KGLEDTFSKK RTRSIDIVPF LGPEELSQSD  780
QLESAFQFDP RPFAELNDEP GKSELENLAL NIQGLGKGKQ DVNGTRIQAR NQASNETELT  840
DDFWEELLNE GARGECEAGM PELERRRPRY VDALAQKLGY LSNSSQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vr3_A3e-7412228813179Acireductone dioxygenase
5i8s_A3e-7412228811671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8t_A3e-7412228811671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8y_A3e-7412228811671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i91_A3e-7412228811671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i93_A3e-7412228811671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368375RRRLSIRP
2647653LKMIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G14700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104470.0AC210447.1 Oryza glaberrima clone OG_BBa0010M11, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
TrEMBLJ3LK940.0J3LK94_ORYBR; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
STRINGOB03G14700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.15e-94heat shock transcription factor A6B