PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G14030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1535aa    MW: 169432 Da    PI: 6.3927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G14030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0514251450123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                    ++C+   C+++F +k +L+ H+r+ +
  OB03G14030.1 1425 FRCEieFCDMTFETKAELRAHQRNiC 1450
                    89*********************877 PP

2zf-C2H212.30.000514501472323
                    ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                    C+   Cgk+Fs++ +LkrH+ +H
  OB03G14030.1 1450 CTdeSCGKRFSSHKYLKRHQCVH 1472
                    77778***************998 PP

3zf-C2H213.60.000215081534123
                    EEET..TTTEEESSHHHHHHHHHH..T CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                    ykC   dCg+sF+  s++ rH ++  H
  OB03G14030.1 1508 YKCAapDCGQSFRYVSDYSRHRKKfnH 1534
                    89********************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.6E-94788IPR003349JmjN domain
PROSITE profilePS5118312.8154889IPR003349JmjN domain
PfamPF023756.9E-125182IPR003349JmjN domain
SuperFamilySSF511978.51E-27225423No hitNo description
SMARTSM005585.3E-45241427IPR003347JmjC domain
PROSITE profilePS5118434.608244427IPR003347JmjC domain
PfamPF023735.9E-34274410IPR003347JmjC domain
Gene3DG3DSA:3.30.160.609.4E-414211447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551114251447IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5814251447IPR007087Zinc finger, C2H2
SMARTSM003552.314481472IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00614481477IPR007087Zinc finger, C2H2
PROSITE patternPS00028014501472IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-714541478IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-1014641506No hitNo description
SMARTSM003556.6E-414781502IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96714781507IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-1114791502IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014801502IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-914961531No hitNo description
Gene3DG3DSA:3.30.160.602.0E-1015031530IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15715081535IPR007087Zinc finger, C2H2
SMARTSM003550.6615081534IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015101534IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1535 aa     Download sequence    Send to blast
MWRQQWLLSL VLVPRGRQCS TSSNGSASTQ TTEIGPVYIC SPLTTMQLVA YRPTESEFAD  60
PIAFLSRVDR EAAAYGICKV IPPHPRPSRR FVFAHLNRSL VSSCDAPAPT TSDPAGPSSS  120
PPASAAVFTT RHQELGTARR GRPTPQVLKQ VWQSGERYTL DQFEAKSRAF SKTHLSGLNE  180
PSALTVESLF WKASADRPIY IEYANDVPGS GFAAPVQLQR KKKRKRESAP MDEWEKSAGW  240
RLSNSPWNLQ AIARAPGSLT RFMPDDVPGV TSPMVYIGML FSWFAWHVED HDLHSLNFLH  300
TGAPKTWYAV PGDRAVELEE VIRVHGYGGN PDRIGTCLVL CFFIEMQCPT ASSLAVLGEK  360
TTLMSPEVLI DSGVPCCRLV QYPGEFVVTF PRAYHVGFSH GFNCGEAANF ATPQWLKFAK  420
EAAVRRAVMN YLPMLSHQQL LYLLAVSFIS RNPRELLTGI RTSRLRDRKK EERELLVKQE  480
FLQDMISENE LLCSFLEKKS VNNVVLWEPD LLPSLTALHP CSSALKVHEK KGEDGPRIEP  540
AESNSKDNCS SDGTEYITGT ISKGLSTDSK QAPEGEKLDT DDDDDLPFDL SIDSGSLTCV  600
ACGILGYPFM AILQPSRKAL EEISLVDKER YKVSCEKENS SNVLPCSPND GSSGCSLITS  660
KSSSPVENAN FSHQNLKPNR SDTSLKGKEF DGTLGKHSST SCSCSSGDTI DPYGDTETPE  720
KKIPSDGPFS ELSKQTDRGH INVQAVEVSD GTMRWNTGCT FARPRIFCLQ HALEIEELLA  780
SKGGVHTLII CHADYVKLKA LAISIAEEIE FHFDYKDVAL ANASKSDLHL INISIDDEGY  840
EEEGTDWTSR MGLNLKHCSK IRKETSGSQK QPPLSFWGLF SKPSPISVVP NLKWLCRKAR  900
TPYKVVGYTS SPDVVAAPDK VKPAVTKSPI DTADNAHENV KSEQTLQKVC VLKETSDVAD  960
MSCCPKENDQ DGHSLINIPI AVAEYPMMHQ VCEGPVSVSS FDDPICSFDS QGAPTTAAVS  1020
AAKPTREQCD VESTELTSSS NPVQQFLDNE LTVERSSMNL VSNHEYLESD NATSVCKEEQ  1080
LQVQEDQEAM EPCNNPITDL VRPCLTEGIT FAGELHGGAA SSTLENEDSC GNTSYHSDTV  1140
LKDSKSDTDG QPETCAGSAV LVTPKSSCDQ MISSGDRSCS LIVDFPVSSD AAVSSEKLSM  1200
AHGLMSTQAV RNSKAPLRSL NPEQAEASLT DLKAAKVNCI HATQLPHECP SSEFIISEGT  1260
QKSASVTAIS GQNETSMHRE SNSFDILLGV LANESKVASG KDEIGKASLT LMTLASNDHS  1320
ADDVTQGKVI IDRSRDFCAS DIVSRSIGSS NRTNIIFYTR RKLKRKNRSK SNINSLQSIG  1380
SYVRSPCESL RPRTRPAIVE DMENETKSVE ASVAKKRKRT KLESFRCEIE FCDMTFETKA  1440
ELRAHQRNIC TDESCGKRFS SHKYLKRHQC VHRDERPFKC PWDGCPMTFK WLWAQTEHIR  1500
VHTGERPYKC AAPDCGQSFR YVSDYSRHRK KFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-735044117346Transcription factor jumonji (Jmj) family protein
6ip4_A6e-735044117346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218225QRKKKRKR
2219225RKKKRKR
3219226RKKKRKRE
413591365RRKLKRK
514141419KKRKRT
614141421KKRKRTKL
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G14030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651047.20.0PREDICTED: lysine-specific demethylase SE14-like
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLJ3LK270.0J3LK27_ORYBR; Uncharacterized protein
STRINGOB03G14030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-171C2H2 family protein