PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G14030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 1535aa MW: 169432 Da PI: 6.3927 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 1425 | 1450 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F +k +L+ H+r+ + OB03G14030.1 1425 FRCEieFCDMTFETKAELRAHQRNiC 1450 89*********************877 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 1450 | 1472 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H OB03G14030.1 1450 CTdeSCGKRFSSHKYLKRHQCVH 1472 77778***************998 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.0002 | 1508 | 1534 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC dCg+sF+ s++ rH ++ H OB03G14030.1 1508 YKCAapDCGQSFRYVSDYSRHRKKfnH 1534 89********************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.6E-9 | 47 | 88 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 12.815 | 48 | 89 | IPR003349 | JmjN domain |
Pfam | PF02375 | 6.9E-12 | 51 | 82 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 8.51E-27 | 225 | 423 | No hit | No description |
SMART | SM00558 | 5.3E-45 | 241 | 427 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 34.608 | 244 | 427 | IPR003347 | JmjC domain |
Pfam | PF02373 | 5.9E-34 | 274 | 410 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 9.4E-4 | 1421 | 1447 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 11 | 1425 | 1447 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.58 | 1425 | 1447 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 1448 | 1472 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.006 | 1448 | 1477 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1450 | 1472 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-7 | 1454 | 1478 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.11E-10 | 1464 | 1506 | No hit | No description |
SMART | SM00355 | 6.6E-4 | 1478 | 1502 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.967 | 1478 | 1507 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.2E-11 | 1479 | 1502 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1480 | 1502 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.88E-9 | 1496 | 1531 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-10 | 1503 | 1530 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 1508 | 1535 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.66 | 1508 | 1534 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1510 | 1534 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1535 aa Download sequence Send to blast |
MWRQQWLLSL VLVPRGRQCS TSSNGSASTQ TTEIGPVYIC SPLTTMQLVA YRPTESEFAD 60 PIAFLSRVDR EAAAYGICKV IPPHPRPSRR FVFAHLNRSL VSSCDAPAPT TSDPAGPSSS 120 PPASAAVFTT RHQELGTARR GRPTPQVLKQ VWQSGERYTL DQFEAKSRAF SKTHLSGLNE 180 PSALTVESLF WKASADRPIY IEYANDVPGS GFAAPVQLQR KKKRKRESAP MDEWEKSAGW 240 RLSNSPWNLQ AIARAPGSLT RFMPDDVPGV TSPMVYIGML FSWFAWHVED HDLHSLNFLH 300 TGAPKTWYAV PGDRAVELEE VIRVHGYGGN PDRIGTCLVL CFFIEMQCPT ASSLAVLGEK 360 TTLMSPEVLI DSGVPCCRLV QYPGEFVVTF PRAYHVGFSH GFNCGEAANF ATPQWLKFAK 420 EAAVRRAVMN YLPMLSHQQL LYLLAVSFIS RNPRELLTGI RTSRLRDRKK EERELLVKQE 480 FLQDMISENE LLCSFLEKKS VNNVVLWEPD LLPSLTALHP CSSALKVHEK KGEDGPRIEP 540 AESNSKDNCS SDGTEYITGT ISKGLSTDSK QAPEGEKLDT DDDDDLPFDL SIDSGSLTCV 600 ACGILGYPFM AILQPSRKAL EEISLVDKER YKVSCEKENS SNVLPCSPND GSSGCSLITS 660 KSSSPVENAN FSHQNLKPNR SDTSLKGKEF DGTLGKHSST SCSCSSGDTI DPYGDTETPE 720 KKIPSDGPFS ELSKQTDRGH INVQAVEVSD GTMRWNTGCT FARPRIFCLQ HALEIEELLA 780 SKGGVHTLII CHADYVKLKA LAISIAEEIE FHFDYKDVAL ANASKSDLHL INISIDDEGY 840 EEEGTDWTSR MGLNLKHCSK IRKETSGSQK QPPLSFWGLF SKPSPISVVP NLKWLCRKAR 900 TPYKVVGYTS SPDVVAAPDK VKPAVTKSPI DTADNAHENV KSEQTLQKVC VLKETSDVAD 960 MSCCPKENDQ DGHSLINIPI AVAEYPMMHQ VCEGPVSVSS FDDPICSFDS QGAPTTAAVS 1020 AAKPTREQCD VESTELTSSS NPVQQFLDNE LTVERSSMNL VSNHEYLESD NATSVCKEEQ 1080 LQVQEDQEAM EPCNNPITDL VRPCLTEGIT FAGELHGGAA SSTLENEDSC GNTSYHSDTV 1140 LKDSKSDTDG QPETCAGSAV LVTPKSSCDQ MISSGDRSCS LIVDFPVSSD AAVSSEKLSM 1200 AHGLMSTQAV RNSKAPLRSL NPEQAEASLT DLKAAKVNCI HATQLPHECP SSEFIISEGT 1260 QKSASVTAIS GQNETSMHRE SNSFDILLGV LANESKVASG KDEIGKASLT LMTLASNDHS 1320 ADDVTQGKVI IDRSRDFCAS DIVSRSIGSS NRTNIIFYTR RKLKRKNRSK SNINSLQSIG 1380 SYVRSPCESL RPRTRPAIVE DMENETKSVE ASVAKKRKRT KLESFRCEIE FCDMTFETKA 1440 ELRAHQRNIC TDESCGKRFS SHKYLKRHQC VHRDERPFKC PWDGCPMTFK WLWAQTEHIR 1500 VHTGERPYKC AAPDCGQSFR YVSDYSRHRK KFNHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 6e-73 | 50 | 441 | 17 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 6e-73 | 50 | 441 | 17 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 225 | QRKKKRKR |
2 | 219 | 225 | RKKKRKR |
3 | 219 | 226 | RKKKRKRE |
4 | 1359 | 1365 | RRKLKRK |
5 | 1414 | 1419 | KKRKRT |
6 | 1414 | 1421 | KKRKRTKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G14030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651047.2 | 0.0 | PREDICTED: lysine-specific demethylase SE14-like | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | J3LK27 | 0.0 | J3LK27_ORYBR; Uncharacterized protein | ||||
STRING | OB03G14030.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 1e-171 | C2H2 family protein |