PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G13870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23518.1 Da PI: 5.9445 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H OB03G13870.1 57 YECVFCKRGFTTAQALGGHMNIH 79 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.68E-6 | 54 | 83 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEIGDDKRLM AEIAASSLEQ EVVAAAARRG DDDDVAAVTT TSTSPAAAAA STTRPYYECV 60 FCKRGFTTAQ ALGGHMNIHR RHRGRAKPPG RRDAPTGVTS AVLSRPDVEC YNQNRYLAYS 120 TPPPPPVRPA NPPTGSSFAT YYTGDTAPTV AGVDADCPSL TRELSLFGVA DNSCDHDLCL 180 RLGRVDDGSP HTPEGSPEWL SGELPELDLE LRLGRRPRH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G13870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229755 | 1e-44 | AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651042.1 | 1e-148 | PREDICTED: protein sister of odd and bowel-like | ||||
TrEMBL | J3LK11 | 1e-158 | J3LK11_ORYBR; Uncharacterized protein | ||||
STRING | OB03G13870.1 | 1e-158 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8111 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-12 | C2H2 family protein |