PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G13860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 623aa MW: 66573.5 Da PI: 6.2543 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 512 | 537 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C ++F+++ +L +H ++ + OB03G13860.1 512 FECEidYCRMTFKTRADLSVHKKNtC 537 89*******************99866 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00043 | 536 | 559 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +C+ Cg++F+++ +L+rH++ H OB03G13860.1 536 TCTvkSCGRHFRSHKYLRRHQSIH 559 588889***************999 PP | |||||||
3 | zf-C2H2 | 12 | 0.00065 | 595 | 619 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykC+ C+k+++ s+++rH r++ OB03G13860.1 595 YKCTtpGCSKVYKFVSDFTRHRRRC 619 99*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 22 | 512 | 534 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.42 | 535 | 559 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.009 | 535 | 564 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 537 | 559 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 540 | 566 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.3E-9 | 551 | 593 | No hit | No description |
SMART | SM00355 | 0.04 | 565 | 589 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.468 | 565 | 594 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-9 | 567 | 588 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 567 | 589 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.77E-8 | 584 | 620 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-9 | 589 | 617 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.725 | 595 | 623 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 28 | 595 | 617 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MRVDTRFLFL LLLLAQVAPD AIKQKGHIAG RVPESELRSD ARVGLAERPP VPEDQGRDID 60 DGPPAKKPVT VLEATKGACG FSDAVARLEG SGKTVTEVAT EPAAIVGAPA ANGAVGGQEC 120 KEATCRADES AAELVATGVA SFLTGASAEL DVSKTASFAN LTVTKPRVSE RVSLVHEAAT 180 ETRASVSVPK ATKGASPDGE DAANSEITRG HSQESAAKME VTKEISLVSE AAADTELAER 240 VSVASEHFTE PGVKLSVPES PEVTERVPVA SGLHITGFAS LDKEGAVEPE VTGSGCIANE 300 ASEMKAKEGG CIFTRASAEP EDTGRASVCS GDDDIALDEP RPPDCVSVVA NVKVGNNAGE 360 AVASKLHPSR ANAESVDGST NSTSNGHVSS KSPTADEVAP PGGCVDTPSV SCLSDIVARS 420 IGKSGRTDII CYARRKGKRK LEMVEVKEEN VEMDDSAICD QYDDKLTSEQ TGPCESVTST 480 AVSVEIKIAD IKRELEDSST ASKGKRKKGQ RFECEIDYCR MTFKTRADLS VHKKNTCTVK 540 SCGRHFRSHK YLRRHQSIHN DDMPYKCPWE GCSMAFKWSW DRGEHFQVHT GKKPYKCTTP 600 GCSKVYKFVS DFTRHRRRCK PER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 1e-41 | 512 | 618 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 1e-41 | 512 | 618 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 1e-41 | 512 | 618 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 433 | 439 | RRKGKRK |
2 | 433 | 440 | RRKGKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G13860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229755 | 0.0 | AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651042.1 | 0.0 | PREDICTED: protein sister of odd and bowel-like | ||||
TrEMBL | J3LK10 | 0.0 | J3LK10_ORYBR; Uncharacterized protein | ||||
STRING | OB03G13860.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11491 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 3e-40 | relative of early flowering 6 |