PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G13340.1 | ||||||||
Common Name | LOC102705420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27859.3 Da PI: 7.502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll d+v+q+G g+W+++a+ g++R++k+c++rw +yl OB03G13340.1 15 KGPWTALEDRLLTDYVQQHGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.1e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ +++++++lG++ W++Iar+++ gRt++++k++w+++ OB03G13340.1 68 RGKITPDEETVILQLHAMLGNR-WSAIARCLP-GRTDNEIKNYWRTH 112 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.495 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.28E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.403 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.79E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDAISSLMLQ QGWRKGPWTA LEDRLLTDYV QQHGEGSWNS VAKLTGLRRS GKSCRLRWVN 60 YLRPDLKRGK ITPDEETVIL QLHAMLGNRW SAIARCLPGR TDNEIKNYWR THFKKARPSR 120 RARAQLLHQY QLQQQQQHRQ YLQSLSLLQQ QQQLQYLQQQ EQQQQLASLQ EQRRPPEAAA 180 DESMMAQVMA MSDLHATERC CAAVSLPDDD GVLPADDDAL WDSLWRLVDG DGSCGEGSSG 240 GEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-27 | 15 | 115 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G13340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960450 | 0.0 | EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651026.1 | 1e-178 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | J3LJV8 | 1e-176 | J3LJV8_ORYBR; Uncharacterized protein | ||||
STRING | OB03G13340.1 | 1e-177 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13228 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-62 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Entrez Gene | 102705420 |