PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 264aa    MW: 28299.3 Da    PI: 6.5512
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-0925621954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                  Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  OB03G11840.1 25 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 62
                  664559******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.05366IPR001356Homeobox domain
SMARTSM003896.6E-9670IPR001356Homeobox domain
CDDcd000863.66E-13667No hitNo description
SuperFamilySSF466895.99E-18773IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28972IPR009057Homeodomain-like
PfamPF059202.6E-182362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSHPWRPQR GLPERAVTIL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS QVSNWFINAR  60
VRLWKPMVEE MYVEEMKDKD GGSGGQGSLN PRPSCSHASE QLVVGDGDAG GEQKPTRAQL  120
VRHDAGSLAS VVNVVDGAAR AGGGARLHQV ESFGIMDHLD FDAYDDGQHQ QHGGFGASGG  180
VSLTLGLQQH GSHDGGVNIA FGAPPHMGGA GFLYPGEHLV DAVHPVHGHY GGATMDGGDT  240
TSHAAQERYR SLSAGFHLLR DLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-181270563Homeobox protein Meis2
4xrm_B3e-181270563Homeobox protein Meis2
5bng_A2e-181270159Homeobox protein Meis2
5bng_B2e-181270159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212071e-159AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649302.10.0PREDICTED: homeobox protein BEL1 homolog
TrEMBLJ3LJF80.0J3LJF8_ORYBR; Uncharacterized protein
STRINGOB03G11840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-52TALE family protein