PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G11530.1
Common NameLOC102717876
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 650aa    MW: 72719.2 Da    PI: 6.3788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G11530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.4e-5761331128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s 
  OB03G11530.1   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS- 100
                   79****************************.99**************95334455777**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++vg+kktLv+y+grap+g++tdWvmheyrl
  OB03G11530.1 101 QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                   8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-644156IPR003441NAC domain
PROSITE profilePS5100561.5476156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHAEQPQWM  180
TSNVDRSPTL EVSFDGRGDD FESSGFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE  240
DAFNATNPFM TNPVAANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKTGI  300
LRSNPNEVDI LQEFLSVATA SQELINGSSS YPDMWLGAST SSASYINELS SLVEMGGIGT  360
SNHSESARLQ VEITDMEVFK DEKKRVENLR GIKLVNNDLG EIVVEGDENN LTQAIVAQYP  420
IKDTADNSGE AGHRMTDPTD VGGIDTAPIF SQSQPDDFAT GFEDVNPDAT FDLYEKVDVN  480
HGLFVSRVGA AKTFFHRIEP SKKVSFHSNP AASAVSKATE KFHFPILTTK VSGRVSIFSK  540
FKALIRDKLF LMRPSSSYQR LGSSKETTVS ELLQIVSLLL APKQVTGPTE QELVKKKAKE  600
VMKPGWGRDG SNKLWLPLSK GKGISSMFLS GKWTFLTSAL AIRTPAECDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B2e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A2e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B2e-55116212171NO APICAL MERISTEM PROTEIN
3swm_A2e-55116215174NAC domain-containing protein 19
3swm_B2e-55116215174NAC domain-containing protein 19
3swm_C2e-55116215174NAC domain-containing protein 19
3swm_D2e-55116215174NAC domain-containing protein 19
3swp_A2e-55116215174NAC domain-containing protein 19
3swp_B2e-55116215174NAC domain-containing protein 19
3swp_C2e-55116215174NAC domain-containing protein 19
3swp_D2e-55116215174NAC domain-containing protein 19
4dul_A2e-55116212171NAC domain-containing protein 19
4dul_B2e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G11530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649289.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLJ3LJC70.0J3LJC7_ORYBR; Uncharacterized protein
STRINGOB03G11530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-133NAC domain containing protein 28