PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB03G10720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33811.9 Da PI: 6.0823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.8 | 4.4e-49 | 12 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 l pGfrFhP+deelv++yL++k ++++ + +++ evd++ +ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkdk++l++ OB03G10720.1 12 LLPGFRFHPSDEELVCYYLRNKQQQQTAAA-TMLVEVDLHACEPWELPEVAKMGADEWYFFSYRDRKYATGSRRNRATKQGYWKATGKDKAILHEee 107 579**********************99887.88***************88888999**************************************877 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ g +ktLvfy grap+g+k+ W mhe+rl OB03G10720.1 108 dgRRAVAGARKTLVFYFGRAPNGRKSGWGMHEFRL 142 766777***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-58 | 7 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.489 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-26 | 14 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MMAGLRAIES RLLPGFRFHP SDEELVCYYL RNKQQQQTAA ATMLVEVDLH ACEPWELPEV 60 AKMGADEWYF FSYRDRKYAT GSRRNRATKQ GYWKATGKDK AILHEEEDGR RAVAGARKTL 120 VFYFGRAPNG RKSGWGMHEF RLLHLHPNPK NMQEEEDWVL CRVFHKQATG VVATTTPSSS 180 SSAPATHHLQ QLQVDNESSP LISSSPAAPV IISEQDQFMS IQLHEDDHHQ QRIVCSSRND 240 EQQQLLDLSN SVLQAPAFLE FEQAPGAGME IITEMESLQT TYCSVLQDAN NYYSQLY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 12 | 169 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 12 | 169 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 12 | 169 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 12 | 169 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 12 | 169 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 12 | 169 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 12 | 169 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB03G10720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK070416 | 1e-82 | AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650960.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
TrEMBL | J3LJ46 | 0.0 | J3LJ46_ORYBR; Uncharacterized protein | ||||
STRING | OB03G10720.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16917 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-66 | NAC domain containing protein 74 |