PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0325G10010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 125aa MW: 13966.8 Da PI: 10.4091 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63 | 9.5e-20 | 10 | 122 | 3 | 114 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 GfrF+P+ ee+v +yL + ++g++ ++ee+i+++d+y +eP+dL + +++++ + +fF++ ++ r +r++ g+W ++ + +++ OB0325G10010.1 10 IGFRFNPSPEEVVAFYLPRLIAGQQpSDTEECIHRADVYGAEPKDLAAefapVARSTNGDRFFFTQCRRIR---GRFSRKAGGGTWVSQSS-RAI 100 7*********************9995666677**************8535543334444789999998865...5999999*****98865.9** PP NAM 93 lskkgelvglkktLvfykgrap 114 ++ +g+++g k + f k++ + OB0325G10010.1 101 KNPQGAKIGESKNFRFKKKDGK 122 ****************865444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-18 | 6 | 122 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.371 | 8 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-10 | 11 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MADLSFFLGI GFRFNPSPEE VVAFYLPRLI AGQQPSDTEE CIHRADVYGA EPKDLAAEFA 60 PVARSTNGDR FFFTQCRRIR GRFSRKAGGG TWVSQSSRAI KNPQGAKIGE SKNFRFKKKD 120 GKNTD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0325G10010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006665127.1 | 3e-84 | PREDICTED: NAC domain-containing protein 90-like, partial | ||||
TrEMBL | J3LIV7 | 7e-87 | J3LIV7_ORYBR; Uncharacterized protein | ||||
STRING | OB0325G10010.1 | 1e-87 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-10 | NAC family protein |