PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G44380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 772aa    MW: 89065.2 Da    PI: 8.9584
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G44380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.72.5e-2580174289
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   fYn+YA++vGFsvrks+++k+ r+g + + +fvC+keg+++++kkk         +++ ++++  trtgCka+ ++++ k+g+w+++ +e++HnH +
  OB02G44380.1  80 FYNDYAYRVGFSVRKSSKTKN-RDG-VSSVRFVCNKEGFSDSQKKKkkpigsvndQRTPEKEKGMTRTGCKASCRIRLYKSGVWRISVFEENHNHVV 174
                   ****************98888.666.9**************9999999***99876667778899******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2280174IPR004330FAR1 DNA binding domain
PfamPF105511.5E-31297390IPR018289MULE transposase domain
PROSITE profilePS5096610.633581617IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-4586616IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-6592619IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MASFDGYISA PTFEDGPRVP WQLDSTDPYV ENLDELLVGC MTPHEIEDSI EIIADEVAHG  60
DKSQPYVGME FSTPEEAYTF YNDYAYRVGF SVRKSSKTKN RDGVSSVRFV CNKEGFSDSQ  120
KKKKKPIGSV NDQRTPEKEK GMTRTGCKAS CRIRLYKSGV WRISVFEENH NHVVIKSPSK  180
KRNLRSHKCL SEEDKKIIRN LSAQNMKPSQ ILEYLAVQYG GKQNIRFKKK DVSNEVSAEN  240
RSLLGVDVDT TLCYFQKKKE KDPEFFYAID LDENGAVKNI FWVDGRGRRS YQEFGDVVTF  300
DTTYQTNIYS MPLAPFLGVS HHRHTISFGW ALLRLEDAPN FCWLFKTWLE AMYGKHPSAI  360
ITDQDPAMKK AIVLIFPKTK HRCCQWHVMR KARDHLGLLY SQMEGFKEEL QAVINRSLTV  420
VAFERDWEAM LVKFKLTDNS HLKLMFSTRT QWVPAYFRDT FFANMSTTQR SESMNAILKL  480
WVDSHKSIYQ FVKQIEKLTD GIWQRESDED LKSMNEQPHL YSPYQMEIEA RMVYTRNVFS  540
VFKDIVRESF LGFVTEIIKD KLYHVRISFN PQFRNFKPES YEIEVDIETS RVSCTCKGFE  600
VEGLICPHSI KVMHHIGMAH LPAHYILTRW TKGANANSKK HLSERSMDTG QTIELQALRF  660
ATIKSSLMEM GKVGALSVET FNCLKQIIID GMAKLMTMED AKLMSMGQTI VTVDPPEDGT  720
KEVSSKPLYI DPPDAQCKGK RKKLTRFQPP ADKKERKMRT CSICNAKKRP QC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G44380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645669.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3LIH10.0J3LIH1_ORYBR; Uncharacterized protein
STRINGOB02G44380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-122FAR1-related sequence 5