PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G43730.1
Common NameLOC102713987
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 418aa    MW: 46347.7 Da    PI: 6.0168
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G43730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.49.1e-35238292155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr+rWtpeLHerFv+av++LGGsekAtPk+i ++mkv+gLt++hvkSHLQkYR+
  OB02G43730.1 238 KPRMRWTPELHERFVDAVNKLGGSEKATPKAIQKVMKVEGLTIYHVKSHLQKYRT 292
                   79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.81E-19235293IPR009057Homeodomain-like
PROSITE profilePS5129413.003235295IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-31237293IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-26238292IPR006447Myb domain, plants
PfamPF002492.3E-11240291IPR001005SANT/Myb domain
PfamPF143792.3E-16322368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDQIRNGKVP RYLSSSITVV PALSEVAFPN FSDYRPAYTE REQCGSSMNS FGTSSSQPMC  60
MLASNFTSDI YINNSESPVG KLSSESYAID TSCCDSSLLP TQSSYKGNPN SLRMLYPKVS  120
EQNSWSQEPL PGVFVCPTSV DCLNQQDATI FDQQMQDSIA RSPNTNLGKQ IEWFSSGTSW  180
QYMENSDSAR SVLKAVDATS TAPSNYLHCH TPRNASNLPN SNELCSGNLT SSNITPNKPR  240
MRWTPELHER FVDAVNKLGG SEKATPKAIQ KVMKVEGLTI YHVKSHLQKY RTVHHRPELS  300
DGESAKRNGQ ADEVSSQPMK GMETCEELRA QIGLQKQLHE QLEIQRKLQM QVEEHSKYLA  360
MVIAKQSESL KQLGALPRSL GAPSTQVLDN KETCEGQTGD TDSAEQKSEE HDLEISAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-27238296260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G43730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648097.10.0PREDICTED: uncharacterized protein LOC102713987 isoform X2
TrEMBLJ3LIA60.0J3LIA6_ORYBR; Uncharacterized protein
STRINGOB02G43730.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.17e-49phosphate starvation response 1