PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G43380.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 320aa    MW: 34737.9 Da    PI: 8.3477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G43380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49101511128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                   lppGfrF P+deelv++yL++kv +++    +         ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgk
  OB02G43380.1  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagV---GggaggTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 103
                   79********************9999965551...1445547***************87788999******************************** PP

           NAM  89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   d+ +++         + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OB02G43380.1 104 DRVIHNPklhaaagrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 151
                   *****99777776655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-597170IPR003441NAC domain
PROSITE profilePS5100556.0210170IPR003441NAC domain
PfamPF023659.1E-2811151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGGGAGGTMV EVDLHTHEPW  60
ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KLHAAAGRRA  120
SIVGMRKTLV FYRGRAPNGV KTNWVMHEFR MENPHTPPKE DWVLCRVFYK KKADTETEYS  180
MESEQDAVIA MTRSAAAMKG GSGCYSNSSS PHDAGHHHHS PPFPPSLACS SGGGGGHHYQ  240
PPPPPVIGGS LNEFPITTTS MALYSSIFDF SQHLDGTGVA DSGGGAGGGG GGGAVRSDGP  300
RARGALQLQQ PDADVIFHPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-4711764170NO APICAL MERISTEM PROTEIN
1ut4_B7e-4711764170NO APICAL MERISTEM PROTEIN
1ut7_A7e-4711764170NO APICAL MERISTEM PROTEIN
1ut7_B7e-4711764170NO APICAL MERISTEM PROTEIN
3swm_A9e-4711767173NAC domain-containing protein 19
3swm_B9e-4711767173NAC domain-containing protein 19
3swm_C9e-4711767173NAC domain-containing protein 19
3swm_D9e-4711767173NAC domain-containing protein 19
3swp_A9e-4711767173NAC domain-containing protein 19
3swp_B9e-4711767173NAC domain-containing protein 19
3swp_C9e-4711767173NAC domain-containing protein 19
3swp_D9e-4711767173NAC domain-containing protein 19
4dul_A7e-4711764170NAC domain-containing protein 19
4dul_B7e-4711764170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G43380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609760.0AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
GenBankAK0709820.0AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.11e-155protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE62e-59NAC22_ARATH; NAC domain-containing protein 21/22
SwissprotQ9FLJ22e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLJ3LI710.0J3LI71_ORYBR; Uncharacterized protein
STRINGOB02G43380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]