PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G41370.1 | ||||||||
Common Name | LOC102708214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 42603.4 Da PI: 7.4015 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.4e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e OB02G41370.1 89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 58.6 | 1.9e-20 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a++ P+P++L+ ++++ OB02G41370.1 17 PFTASQWQELEHQALIYKYMASGTPIPSDLIIPLRR 52 9******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.2E-10 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.0E-15 | 17 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.507 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MMMMSGRPSG GAGGRYPFTA SQWQELEHQA LIYKYMASGT PIPSDLIIPL RRSFLLDSAL 60 ATSPSLAFPP QPSLGWGCFG MGFGRKAEDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPPP SSSASSPASN ASAGAGAGAT TTSSPAPSYN RPAAHDAAPY 180 QALYGGPYAA ATARTPAAAA FHPQVSPFHL HLDTTHPHPP PSYYSMDHKE YAVYGHTAKE 240 VHGEHAFFSD GTERDHHAAS HGQWQFKQLG MEPKQSTTTL FPGTGYGNTA ASPYAIDLSK 300 EDDEEKERRQ QQQQHCFLLG ADLRLEKPVG HDPAAAAQKP LRHFFDEWPH EKSTKGSWMG 360 LEGETQLSMS IPMATNDLPI TATSAYHHDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G41370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF201895 | 0.0 | AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647996.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | Q6AWY8 | 0.0 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | J3LHM0 | 0.0 | J3LHM0_ORYBR; Uncharacterized protein | ||||
STRING | OB02G41370.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-55 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 102708214 |